Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02285 ATGGAAAGGAAACTTGAACACGGAGTTCATGTAGTGTCTGGAACTCCCGGTCGAGTTCTTGACATGATCAAAAGGAGAACATTGCACACAAGGTCTATCAAGTTGCTTGTTCTGGATGAATCTGATGAACTGCTGAGCAGAGGTTTTAAAGATCAAATTTATGATGTGTACAGATATCTCCCGCCGAATCTTCAGGTTGTCCTGGTTTCCGCTACGCTACCTCATGATATTTTGGAGATGACAAATAAGTTCATGACAGATCCTGTCAGGGTCCTTATAAAACGCGATGAATTGACATTGGAGGGTATCAAGCAATTTTTCGTTGCCGTTGAAAGGGGGGAATGGAAGTTTGACACTCTGTGCGATCTTTATGATATTCTTACCATTACTCAAGCTGTTATATTCTGTAACACCAAGCGAAAGGTGGACTGGTTAACTGAAAAATTGCAGAACAATAATTTCACCGTCTCCTCAATGCACGGTGACATGCCTCAAAGAGAAAGAGATGCAATTATGGGAGAATTTCGTGCGGGAACAACCCGAGTATTTATAACAACAGATGTTTGGGCTCGTGGCCTTGATGTGCAGCAGATTTCTCTAGTTATTAATTACGTCGTTCTACAATCGCAAGAGTAA 636 0.4167 MERKLEHGVHVVSGTPGRVLDMIKRRTLHTRSIKLLVLDESDELLSRGFKDQIYDVYRYLPPNLQVVLVSATLPHDILEMTNKFMTDPVRVLIKRDELTLEGIKQFFVAVERGEWKFDTLCDLYDILTITQAVIFCNTKRKVDWLTEKLQNNNFTVSSMHGDMPQRERDAIMGEFRAGTTRVFITTDVWARGLDVQQISLVINYVVLQSQE 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02285 211 Pfam DEAD/DEAH box helicase 3 77 IPR011545 GO:0003676|GO:0005524
Trre15g02285 211 Pfam Helicase conserved C-terminal domain 117 205 IPR001650 -
Trre15g02285 211 Gene3D - 1 98 IPR027417 -
Trre15g02285 211 CDD SF2_C_DEAD 103 204 - -
Trre15g02285 211 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 122 211 IPR001650 -
Trre15g02285 211 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 91 IPR014001 -
Trre15g02285 211 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 206 - -
Trre15g02285 211 SMART helicmild6 143 210 IPR001650 -
Trre15g02285 211 Gene3D - 99 211 IPR027417 -
Trre15g02285 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 204 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02285 Trre-Chr15 18880828 18882185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02285 3 211 Eukaryotic Initiation Factors Gene Family AT3G19760 82.297 2.23e-131 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02285 K13025 - gmx:100800020 377.096