Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02283 ATGGCTGAAGAACAATTTCAAGCAAGTGGAAATTGGTGGGAGACTCCAGCTAGAAACATGAGGTATGAAAGTGTTGAACAACAACAACAACAACAATCTTCTTCCTTTGGTGGTTGGCAGCAACAACAACAACATCATGATACTACTCAAAAGCTTCAACCTTCAGATTCTTCAACTTCAAACAATGACTCCAACTTGCATATGATGGGTTTAGGACTTTCATCTCAAACCATTCATTGGAATCAAGCATCTTTATTAAGAAATGAGAAGGCTTCAGAGGGAAGTTTCAGGTCTATGCTTCAAGAAAATTTGAACACATCAAGCACAAATTTTGAGCAAGAAAGTGGTGGATTATCTCATCAAGTTAATTGGAGACAAGAAAAGTTATTCTCAAATGAATCTTCAAGCAATGAATTCAAGCAAGTGAATAGAGGTTTCTCTTTAGATCAAACACAATTTAGTCCTCAATATAGTTCTGGAGATAGTAACATGATAAGCCAAATGGATTCTTCAGCTTTGTATGGTAACTCTTCAATTTTACAAGGACTATTAGGAAATGAAACTAATCAAATTCAATCTCAACATGGTAATTCATTTGAGAATAGATCAATGAATTTTCCATACTCAACAACAAGCTATGGTTTGAGTACTAATGAGTTAATGCCTTCTTGGTCTAAAGTACCTCATCAAAAACAACAACAAAATAATCAACTGCATTTCACCAATAATGCTCCCTTTTGGAATGCTTCTGAGACTACTATTAAGGATGCTTCATCTAGCTTCTTGCCCCCATTTTCCACACCAAATTTTGGTGCACAAACAAAGAATATATCTGAAGGTAGGGACTCAAGTGATGTGGTTAAAAAAAGTGTGAGTGAGCCTGCACCTAAAAGGTCCAGAAATGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAAATGGGTGACAGAGTCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCAATTGAATATATCAAATTCCTCCATGAACAAGTGACGGTTTTAAGCACCCCATATATGAAAAGTGGAGCTCCAATACAACATCAACAGAGTTCTGGTAAATCTAAAGAAGCAGAGGGTCCAAAGCAGGATCTTAGAAGCAGAGGATTGTGCTTAGTACCAGTTTCTAGTACATTTCCAATGACTCATGAGCCCACAGTTGAATATTGGACACCAACATTTGGAGGAACTTTCAGATAA 1266 0.3744 MAEEQFQASGNWWETPARNMRYESVEQQQQQQSSSFGGWQQQQQHHDTTQKLQPSDSSTSNNDSNLHMMGLGLSSQTIHWNQASLLRNEKASEGSFRSMLQENLNTSSTNFEQESGGLSHQVNWRQEKLFSNESSSNEFKQVNRGFSLDQTQFSPQYSSGDSNMISQMDSSALYGNSSILQGLLGNETNQIQSQHGNSFENRSMNFPYSTTSYGLSTNELMPSWSKVPHQKQQQNNQLHFTNNAPFWNASETTIKDASSSFLPPFSTPNFGAQTKNISEGRDSSDVVKKSVSEPAPKRSRNETPSPLPAFKVRKEKMGDRVTALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKEAEGPKQDLRSRGLCLVPVSSTFPMTHEPTVEYWTPTFGGTFR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02283 421 MobiDBLite consensus disorder prediction 1 69 - -
Trre15g02283 421 MobiDBLite consensus disorder prediction 271 311 - -
Trre15g02283 421 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 301 350 IPR011598 GO:0046983
Trre15g02283 421 MobiDBLite consensus disorder prediction 21 69 - -
Trre15g02283 421 FunFam Transcription factor bHLH123 family 311 373 - -
Trre15g02283 421 CDD bHLH_AtbHLH_like 307 358 IPR045239 -
Trre15g02283 421 MobiDBLite consensus disorder prediction 281 296 - -
Trre15g02283 421 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 107 402 - -
Trre15g02283 421 MobiDBLite consensus disorder prediction 365 389 - -
Trre15g02283 421 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 368 IPR036638 GO:0046983
Trre15g02283 421 Gene3D - 311 373 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02283 Trre-Chr15 18862422 18865871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02283 87 421 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 43.814 1.74e-76 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02283 - - gmx:100778697 544.273