Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02274 ATGGACATGACCTCAAGAAACATAGATGCAGATTCTCAAACACCACAATCAAAACAACAACAAAACAATAATATAATAACACCAACAACAACCTTAAAGTCTTGTTCACCTTTCACAAACGGAACACATAATAAACGCCACTACACAACAACACAACCACAACCACTTTCTTCTTCTATGAGTTTTTCTTACAAAGAATGTCTCAAGAATCATGCTGCTTCATTAGGTGGACATGCTCTTGATGGATGTGGTGAATTCATGCCATCATCATCATCATCATCTATTAATCCTAATGACCCTAGATCCCTTAAATGTGCTGCTTGTGGTTGCCACCGTAATTTCCACCGCCGTGAACCACAAGAACACATCATAAGCACCACCGCTGCAACAACCACCACTGCCGCCACCACCACCACCGCCAATAACAATACTTATCTTAGCTGCATCTACACAACCCCATCAACAACAGTTCCACCACCACAACCACCACCGCCATTACAACTACCACACCGTGGACCCATTAGTCAAAGCACAAGCCCAAGTCAAAGTACAAGCCCAAGTCATAGCCCAAGCCCAATTTCAAGCCCATCTTCACCACCACCACTCTCCCATGTACCACCTTCTTCTTACCATTCTTCAGCACCTCACATGCTCTTAGCACTTGGAAATCCTTATTCAACAGTCACACCACCACACTCTGATCATAATCATCTTCAAAGGAATCTCAATTTTGCTTCATCTGTTGTTAAACTTGAAAACAACAACAACAACAACAACAACAACAGCATCGTCAACAACAACAGCAACAACACAAGTAGTGGAAAAAAGAGATACAGGACAAAATTCAGCAAGGAGCAAAAAGAGAAGATGCATGGATTTTCAGAGAAATTGGGATGGAGAATGCAAAAGGGTGATGATGGATTAGTTCAGAAATTCTGCAATGACATTGGTGTTTCAAGAGGGGTATTCAAAGTTTGGATGCATAACAACAAGAATAATAGTTTGAGGAAGAAATCAGAATCTGATGTTGGAATTGGAATTGCTACTCAAGGTGATAACAAGAACAATGATGGATCTAACAATGTGATTCTTATGAATAATGACGGTGGATGTGTCAGTGTTCGTGTCGTTTCATCTGTTGATGGTTTATCGTCTTAA 1158 0.4076 MDMTSRNIDADSQTPQSKQQQNNNIITPTTTLKSCSPFTNGTHNKRHYTTTQPQPLSSSMSFSYKECLKNHAASLGGHALDGCGEFMPSSSSSSINPNDPRSLKCAACGCHRNFHRREPQEHIISTTAATTTTAATTTTANNNTYLSCIYTTPSTTVPPPQPPPPLQLPHRGPISQSTSPSQSTSPSHSPSPISSPSSPPPLSHVPPSSYHSSAPHMLLALGNPYSTVTPPHSDHNHLQRNLNFASSVVKLENNNNNNNNNSIVNNNSNNTSSGKKRYRTKFSKEQKEKMHGFSEKLGWRMQKGDDGLVQKFCNDIGVSRGVFKVWMHNNKNNSLRKKSESDVGIGIATQGDNKNNDGSNNVILMNNDGGCVSVRVVSSVDGLSS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02274 385 MobiDBLite consensus disorder prediction 252 289 - -
Trre15g02274 385 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 64 118 IPR006456 -
Trre15g02274 385 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 118 IPR006456 -
Trre15g02274 385 MobiDBLite consensus disorder prediction 171 191 - -
Trre15g02274 385 MobiDBLite consensus disorder prediction 155 170 - -
Trre15g02274 385 Gene3D - 256 336 - -
Trre15g02274 385 MobiDBLite consensus disorder prediction 192 206 - -
Trre15g02274 385 NCBIfam homeobox domain, ZF-HD class 275 332 IPR006455 -
Trre15g02274 385 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 333 - -
Trre15g02274 385 Pfam ZF-HD protein dimerisation region 62 119 IPR006456 -
Trre15g02274 385 MobiDBLite consensus disorder prediction 153 215 - -
Trre15g02274 385 MobiDBLite consensus disorder prediction 252 276 - -
Trre15g02274 385 FunFam Zinc-finger homeodomain protein 2 262 336 - -
Trre15g02274 385 SUPERFAMILY Homeodomain-like 265 333 IPR009057 -
Trre15g02274 385 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02274 Trre-Chr15 18699044 18700201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02274 56 350 ZF-HD Transcription Factor Family AT1G69600 37.333 1.64e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre15g02274 ZF-HD_dimer 1.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02274 - - tpra:123899747 476.863