Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02271 ATGGAAGAAAGAAATGGTTGTGAGAAACTTGATGAGATTATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAACTAGTTGGATTTTACTTAAAGAGAAAGATTCAACAACGCCCTCTTGCTATTGAGCTCATCAAACAGCTTGATATTTATAAGTTTGATCCTTGGGATCTTCCAAAGTTGGCAAGTACAGGGGAGAAAGAGTGGTATTTTTATTGTCCAAGAGACAGAAAATACAGGAACAGTGCAAGACCTAATAGGGTAACAAAAGCTGGGTTTTGGAAAGCTACAGGAACAGATAGACCTATTTATTCATCAGAGGGTTCTAGATGTATTGGATTGAAGAAATCCTTAGTTTTTTACAAAGGTAGAGCTGCTAAAGGGGTCAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCATTGACTCATCATCATCTCCAAAGAAATATGTAGACAAGACCATTCCTGCTAATGAATCTTGGGCAATCTGCAGGATATTCAAGAAAACAAATGCTACAGCTCAAAGAGCTCTCTCTCACTCATGGGTCCCACCTTTACTTGAAACATCTACCTCCAATGTTCAAACAAATGATGGAAACCAAAACCAATTTTATTCATCTAACATGATGTTGACAAAAAAACCTATGATAAACCAATTTTGTACTACTAATAACCACATTAACACAACCACTTCTAATAGTACAACACTTTGTCCTTTAGATGTTACATCTTATAATGATAAACCAATTATTGATCCATTGATTTATAAACCCTTATACCGATTACCAATTTCAAATGATCAAGATCTTAACCTTAGCACTGTCTCATTATTCTCTTCTCCTCTTGAAACATCTTGTAACAAAACTTCAATGGATGTTTCTTCCTTGCTATTGGGTATGTCATCTGAAGGAACAACCTCAAACTACATTAATGGTTTACAAGATCACTACAATAATGGGTATCCATTCATGGCTAATATTATTCCTAATGTGAATGTGCCACATGTTGATGAACAAGAGTTGGAGACAGTAAGATCCATTGGATTTCCATTTACTATGCCTTTCAATATTGGTGATGCATGGAAATCAAGTCTTGTTTGGGATACTTCCTCTTGTACTTCTGATGAACCCTCTAGTTATTCTACTACCAAGTGTTATACTTAA 1176 0.3571 MEERNGCEKLDEIMLPGFRFHPTDEELVGFYLKRKIQQRPLAIELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTKAGFWKATGTDRPIYSSEGSRCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLIDSSSSPKKYVDKTIPANESWAICRIFKKTNATAQRALSHSWVPPLLETSTSNVQTNDGNQNQFYSSNMMLTKKPMINQFCTTNNHINTTTSNSTTLCPLDVTSYNDKPIIDPLIYKPLYRLPISNDQDLNLSTVSLFSSPLETSCNKTSMDVSSLLLGMSSEGTTSNYINGLQDHYNNGYPFMANIIPNVNVPHVDEQELETVRSIGFPFTMPFNIGDAWKSSLVWDTSSCTSDEPSSYSTTKCYT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02271 391 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Trre15g02271 391 FunFam NAC domain-containing protein 35 23 176 - -
Trre15g02271 391 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 228 - -
Trre15g02271 391 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Trre15g02271 391 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Trre15g02271 391 SUPERFAMILY NAC domain 14 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02271 Trre-Chr15 18675109 18677191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02271 1 309 NAC Transcription Factor Family AT1G26870 56.522 7.48e-110 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre15g02271 NAM 5.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02271 - - vra:106768003 506.523