Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02255 ATGGCTGATCTTCAGAAACCTGGTGTCGGCGACAGTAGGGATATCGAGCAGGCAATTATATCTCTTAAGAAAGGTTCTTATCTACTAAAGTATGGACGAAGAGGGAGGCCAAAGTTTTGTCCTTTTAAGCTTTCCAATGATGAGTCGCTACTCATATGGTACTCTGACAAGGAAGAAAAACAACTTAAACTCAGTACTGTTTCAAAGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCTCGACCTGAAAAGGAGTATCAGTCATTTTCTCTTATATACAATGATAGGTCCTTGGATTTGATCTGCAAGGACAAAGAAGAAGCTGAGATCTGGTTTGCCGGTCTGAAAGCATTAGTTACCCGAGGTAACTATCGCAAGTGGCGATCCGAACCAAGACCTGAAAGTCTGTATTCTGATAGTCCAAAGTCTAGCACAAGAAGATTCAATCCATCATTCCCACCACTTGATCCTGGAGATATTGACAGAGCTTCTTTTCAAAATTCTTATCCAAATAAATGGGTAAAGGCTTTCTCTGAAATAATTTCATACACTGCGCCTAGCAAGGGCTCCAGTCAAGCCGAATCAATTACCAATTCCTCTATTTCCTCCTCCGGGTCCGTGGATAACTCGAGCAATCGAAATTCTGCATCTGAAGCAATTCGAATCAGTTTATCCAGTGCTGTAAGTTCATCCAGCCAGGGTTCTTGTCATGAAGATATTGATGCTTTAGGAGATGTTTTTATTTGGGGAGAAGGTATGAATGATGGAATTCTTGGTGGTGGTCTGCATAGAATTGGAAACTTATCTATTTCAGAGATGGATGCATTCCTTCCCAAGGCACTGGAATCAAGAGTGGTTCTAGATGTTCATAGTATTGGTTGTGGCTATAAACATGCTGTTCTAGTAACCAAGCAGGGAGAAATATTTAGCTGGGGCGAGGAGTCAGGAGGCAGGCTTGGACATGGTGCAGAAGTGGATGTTTTTCACCCTAAGCTTGTTGATAGTCTTAATGGCACGAACATTGAGTTAGTAGCATGTGGAGAATATCATACTTGCGCTGTTACTTATTCTGGGGATCTTTATACCTGGGGTGATGGTATGCACAATTCTGGGTTACTTGGGCATGGAAATGAAGTTAGTCAATGGATTCCTAAGAAAGTAAGTGGTGCATTGGAAGGGTTACGTGTATCATATGTATCCTGCGGACCTTGGCACACAGCTATTGTTACATCAGCCGGGCAGTTGTTTACCTTTGGTGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCGTAGCAGCTCAAATATTCCCCGGGAAGTCGAAACTTTGAAAGGGTTGAGAACAACTAGGGTTTCATGTGGTGTATGGCACACTGCTGCAGTTGTTGAGGTGATAAATGAATCTGTGGATTCTTCTATGCAGTCATCTATTGGAAGACTGTTCACCTGGGGTGACGGGGATAAAGGCCAACTTGGATATGTTGATAAGAAACCCAGACTAGCTCCTTTGTGTGTACTTGCACTGGCTAACGAAAACATTTGTCGTGTAGCTTGTGGCCACAGTCTTACAGCTGCATTGACAACGTTGGGACATGTATATACAATGGGAAGTACAGCTTACGGACAACTTGGTTGTCCTGCAGCAAGTGGGAAGGTCCCTACACGTGTTGAAGATAAAATTGCTGACAGTTTCATAGAAGATATTGCATGTGGTTCGTATCATGTTGCAGTCCTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAAGGTTTAAATGGGCAATTAGGTCATGGTGACAATGTTCACAGGAATAAACCCACACTTGTCGAGTTTTTAAAAGATAAGCAAGTGAAGAGTGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTTTGCCTTCATAAATGGATACCGAGTGTTGATCATTCAGCATGTTCAGGCTGTCATAATCCATTTAATTTCATAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTATTTTGCAAATCATGCACCAGCAAAAAATCTATGAAGGCTTCCCTTGCTCCAAGTTCCAACAAGACATATCGTGTTTGTGATGACTGTTATCATAGACTTAAGAAAGTTTCTGAATCAGTATCCTTGCAAACACCTAGCGGGAAAAGTGTCAGTTTGCATGACAATAAGGCGGCTAAAACACAGGGAACACTATTAAGACTTTCATCGTTTGGTTCTGTTGTTCAATCCGAAAGCAGTCACTCAAAGCTTCCAGATTCTCACGATAGCCAAATTTTTCCAGCTTTTAATGGAAAACTACAGCTGGGGGGTTTTGTTATTTCAAAATCATCAAACTCTCTTTCTGGGGAATCGAGGAAATACGTGTCTGTTTCTGAGCTTGCTACAAGAATTTCTTGTCAGTCAGCCTCTCCAGTTTCATCAAAGTCAAGCCCACGACAATCTTGTGAAGATATTATACATGATGATTTAAAACACAGAAATGATATTCTAGGTCATGAAGTTAATAGTTTAAAAGCACAGGTTGAAGATCTTACTCGGAAGTCAAAAAGTCTTGAGTCTGAACTGGAGAGAACATCAAAGCAATTGAAGGAAGTGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCTGCAAAAGAAGTTATAAAGTCATTGACCGCTCAGTTGAAGGAAATGATGCAAAGACTACCGGAAGGACATAATGCCGACTCAAGCACAGATTCCTATGTTGAAACCAGTAATAGGATTGTAGATCAATCCTTAATTGAGAGTCATATAACAAACATTATCACTGCCAAAAATGAACGCGGCAGCGACGCAGAAAGTACGGTATTTCCTAATGGTGCCACAACACAAAGTGGAAAGGCAGAATTCGTGGTGCAAGATGAACCAGGTGTGTACGTAAGTTTGTCCTCCCTTCCAGGTGGTGGTAATGAACTTAAGCGTGTTCGCTTCAGTCGAAGGCATTTCACTGAAGAAGAAGCTGAAAAGTGGTGGGCCGAAAATGGTACTAAAGTATTGGAGCGACACAATGTAGTTGCCTTGTAG 3057 0.4177 MADLQKPGVGDSRDIEQAIISLKKGSYLLKYGRRGRPKFCPFKLSNDESLLIWYSDKEEKQLKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKEEAEIWFAGLKALVTRGNYRKWRSEPRPESLYSDSPKSSTRRFNPSFPPLDPGDIDRASFQNSYPNKWVKAFSEIISYTAPSKGSSQAESITNSSISSSGSVDNSSNRNSASEAIRISLSSAVSSSSQGSCHEDIDALGDVFIWGEGMNDGILGGGLHRIGNLSISEMDAFLPKALESRVVLDVHSIGCGYKHAVLVTKQGEIFSWGEESGGRLGHGAEVDVFHPKLVDSLNGTNIELVACGEYHTCAVTYSGDLYTWGDGMHNSGLLGHGNEVSQWIPKKVSGALEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDRSSSNIPREVETLKGLRTTRVSCGVWHTAAVVEVINESVDSSMQSSIGRLFTWGDGDKGQLGYVDKKPRLAPLCVLALANENICRVACGHSLTAALTTLGHVYTMGSTAYGQLGCPAASGKVPTRVEDKIADSFIEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNVHRNKPTLVEFLKDKQVKSVFCGSNFTAVVCLHKWIPSVDHSACSGCHNPFNFIRKRHNCYNCGLVFCKSCTSKKSMKASLAPSSNKTYRVCDDCYHRLKKVSESVSLQTPSGKSVSLHDNKAAKTQGTLLRLSSFGSVVQSESSHSKLPDSHDSQIFPAFNGKLQLGGFVISKSSNSLSGESRKYVSVSELATRISCQSASPVSSKSSPRQSCEDIIHDDLKHRNDILGHEVNSLKAQVEDLTRKSKSLESELERTSKQLKEVTAVAADEAGKCKSAKEVIKSLTAQLKEMMQRLPEGHNADSSTDSYVETSNRIVDQSLIESHITNIITAKNERGSDAESTVFPNGATTQSGKAEFVVQDEPGVYVSLSSLPGGGNELKRVRFSRRHFTEEEAEKWWAENGTKVLERHNVVAL 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02255 1018 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 295 305 IPR000408 -
Trre15g02255 1018 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 641 703 IPR017455 -
Trre15g02255 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 361 415 IPR000408 -
Trre15g02255 1018 PRINTS Chromosome condensation regulator RCC1 signature 580 601 IPR000408 -
Trre15g02255 1018 PRINTS Chromosome condensation regulator RCC1 signature 311 327 IPR000408 -
Trre15g02255 1018 PRINTS Chromosome condensation regulator RCC1 signature 402 418 IPR000408 -
Trre15g02255 1018 PRINTS Chromosome condensation regulator RCC1 signature 418 432 IPR000408 -
Trre15g02255 1018 PRINTS Chromosome condensation regulator RCC1 signature 361 377 IPR000408 -
Trre15g02255 1018 PRINTS Chromosome condensation regulator RCC1 signature 522 540 IPR000408 -
Trre15g02255 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 713 IPR013083 -
Trre15g02255 1018 MobiDBLite consensus disorder prediction 132 164 - -
Trre15g02255 1018 Pfam Pleckstrin homology domain 16 122 IPR001849 -
Trre15g02255 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 247 308 IPR000408 -
Trre15g02255 1018 ProSiteProfiles PH domain profile. 21 123 IPR001849 -
Trre15g02255 1018 Gene3D - 474 644 IPR009091 -
Trre15g02255 1018 Pfam FYVE zinc finger 637 703 IPR000306 GO:0046872
Trre15g02255 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 481 532 IPR000408 -
Trre15g02255 1018 Coils Coil 829 870 - -
Trre15g02255 1018 MobiDBLite consensus disorder prediction 139 153 - -
Trre15g02255 1018 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 454 464 IPR000408 -
Trre15g02255 1018 Coils Coil 878 898 - -
Trre15g02255 1018 Gene3D - 184 371 IPR009091 -
Trre15g02255 1018 Gene3D - 372 473 IPR009091 -
Trre15g02255 1018 Pfam Transcription factor regulating root and shoot growth via Pin3 959 1013 IPR013591 -
Trre15g02255 1018 SUPERFAMILY PH domain-like 15 122 - -
Trre15g02255 1018 SUPERFAMILY FYVE/PHD zinc finger 637 713 IPR011011 -
Trre15g02255 1018 SUPERFAMILY RCC1/BLIP-II 245 638 IPR009091 -
Trre15g02255 1018 ProSiteProfiles BRX domain profile. 959 1014 IPR013591 -
Trre15g02255 1018 SMART PH_update 22 125 IPR001849 -
Trre15g02255 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 360 411 IPR000408 -
Trre15g02255 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 481 529 IPR000408 -
Trre15g02255 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 533 581 IPR000408 -
Trre15g02255 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 416 464 IPR000408 -
Trre15g02255 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 309 357 IPR000408 -
Trre15g02255 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 586 633 IPR000408 -
Trre15g02255 1018 Gene3D - 13 129 IPR011993 -
Trre15g02255 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 309 360 IPR000408 -
Trre15g02255 1018 SMART fyve_4 633 704 IPR000306 GO:0046872
Trre15g02255 1018 MobiDBLite consensus disorder prediction 192 215 - -
Trre15g02255 1018 CDD PH_PLC_plant-like 13 123 - -
Trre15g02255 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 416 467 IPR000408 -
Trre15g02255 1018 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 893 - -
Trre15g02255 1018 Pfam Transcription factor BRX N-terminal domain 873 901 IPR027988 -
Trre15g02255 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 585 636 IPR000408 -
Trre15g02255 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 533 584 IPR000408 -
Trre15g02255 1018 FunFam PH, RCC1 and FYVE domains-containing protein 1 218 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02255 Trre-Chr15 18470030 18479199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02255 866 1015 Major Intrinsic Protein MIP AT1G31880 30.864 8.64e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02255 - - lang:109355968 1360.13