Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02251 ATGCTACAAACTTCTCATCAAGATGATCACCATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCTCCTCAAGATTACCATGGAGGAGGAGTATCCTTTTTAGGAAAGAGATCTATGTCATTTTCAGGGATAGAACTTGGAGAAGAAGCTAATGTCGAAGAAGAATTATCGGACGATGGATCACAAATAGGGGAAAAGAAAAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAATTAGGAAACAAACTTGAACCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTTGGACTGCAACCAAGACAGATTGCTATATGGTTTCAAAACAGAAGAGCTAGGTGGAAGACAAAACAGTTGGAAAAAGATTATGATATTCTTAAAAGACAATATGATACTATTAAGGCTGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACAGAGATATTGGCTCTGAAAAGTAGAGAACCAACTGAATCAATAAACCTTAATAAAGAAACAGAAGGATCAAGCAGTAACAGAAGTGAAAACAGTTCAGATATCAAGTTGGATATTTCAACAAGGACACAAGCTATTGATGGTCCTTTATCTAATCAGCAAACAAGCAGAAACCTCTTTCCATCTTCTTCTAGACCAACAGGAGTTCCTCATCAGCTCTTTCAAACCAATTCAAGACAAGACAACATTCAGTGTCAAAAGATTGATCATATGGTCAAAGAAGAGAGTTTGAGTAACATGTTTTGTGCCATTGATGAACAATCTGGATTATGGCCATGGTTGGAGCAGCAACATTTCAATTGA 831 0.3755 MLQTSHQDDHHHQPPPSLNSIITSCAPQDYHGGGVSFLGKRSMSFSGIELGEEANVEEELSDDGSQIGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQYDTIKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSDIKLDISTRTQAIDGPLSNQQTSRNLFPSSSRPTGVPHQLFQTNSRQDNIQCQKIDHMVKEESLSNMFCAIDEQSGLWPWLEQQHFN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02251 276 SMART HOX_1 68 129 IPR001356 GO:0003677
Trre15g02251 276 MobiDBLite consensus disorder prediction 173 228 - -
Trre15g02251 276 MobiDBLite consensus disorder prediction 170 228 - -
Trre15g02251 276 FunFam Homeobox-leucine zipper protein ATHB-13 62 129 - -
Trre15g02251 276 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Trre15g02251 276 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Trre15g02251 276 Coils Coil 117 165 - -
Trre15g02251 276 PRINTS Lambda-repressor HTH signature 96 105 IPR000047 GO:0003677
Trre15g02251 276 PRINTS Lambda-repressor HTH signature 105 121 IPR000047 GO:0003677
Trre15g02251 276 CDD homeodomain 70 126 IPR001356 GO:0003677
Trre15g02251 276 Gene3D - 62 131 - -
Trre15g02251 276 SUPERFAMILY Homeodomain-like 63 127 IPR009057 -
Trre15g02251 276 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 247 IPR045224 GO:0003700
Trre15g02251 276 MobiDBLite consensus disorder prediction 1 25 - -
Trre15g02251 276 Pfam Homeodomain 70 123 IPR001356 GO:0003677
Trre15g02251 276 Pfam Homeobox associated leucine zipper 125 165 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02251 Trre-Chr15 18364906 18366804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02251 1 276 Homeobox Transcription Factor Family AT1G69780 63.103 3.12e-114 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre15g02251 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02251 K09338 - gmx:100801479 447.973