Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02250 ATGGCTTTCTTTCCAACAAATTTCATGCTACAAACTTCTCATCAAGATGATCACCATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCTCCTCAAGATTACCATGGAGGAGGAGTATCCTTTTTAGGAAAGAGATCTATGTCATTTTCAGGGATAGAACTTGGAGAAGAAGCTAATGTCGAAGAAGAATTATCGGACGATGGATCACAAATAGGGGAAAAGAAAAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAATTAGGAAACAAACTTGAACCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTTGGACTGCAACCAAGACAGATTGCTATATGGTTTCAAAACAGAAGAGCTAGGTGGAAGACAAAACAGTTGGAAAAAGATTATGATATTCTTAAAAGACAATATGATACTATTAAGGCTGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACAGAGATATTGGCTCTGAAAAGTAGAGAACCAACTGAATCAATAAACCTTAATAAAGAAACAGAAGGATCAAGCAGTAACAGAAGTGAAAACAGTTCAGATATCAAGTTGGATATTTCAACAAGGACACAAGCTATTGATGGTCCTTTATCTAATCAGCAAACAAGCAGAAACCTCTTTCCATCTTCTTCTAGACCAACAGGAGTTCCTCATCAGCTCTTTCAAACCAATTCAAGACAAGACAACATTCAGTGTCAAAAGATTGATCATATGGTCAAAGAAGAGAGTTTGAGTAACATGTTTTGTGCCATTGATGAACAATCTGGATTATGGCCATGGTTGGAGCAGCAACATTTCAATTGA 855 0.3743 MAFFPTNFMLQTSHQDDHHHQPPPSLNSIITSCAPQDYHGGGVSFLGKRSMSFSGIELGEEANVEEELSDDGSQIGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQYDTIKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSDIKLDISTRTQAIDGPLSNQQTSRNLFPSSSRPTGVPHQLFQTNSRQDNIQCQKIDHMVKEESLSNMFCAIDEQSGLWPWLEQQHFN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02250 284 SUPERFAMILY Homeodomain-like 72 135 IPR009057 -
Trre15g02250 284 FunFam Homeobox-leucine zipper protein ATHB-13 70 137 - -
Trre15g02250 284 MobiDBLite consensus disorder prediction 181 236 - -
Trre15g02250 284 MobiDBLite consensus disorder prediction 178 236 - -
Trre15g02250 284 PRINTS Lambda-repressor HTH signature 113 129 IPR000047 GO:0003677
Trre15g02250 284 PRINTS Lambda-repressor HTH signature 104 113 IPR000047 GO:0003677
Trre15g02250 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 255 IPR045224 GO:0003700
Trre15g02250 284 Coils Coil 125 173 - -
Trre15g02250 284 Pfam Homeobox associated leucine zipper 133 173 IPR003106 GO:0006355|GO:0043565
Trre15g02250 284 CDD homeodomain 78 134 IPR001356 GO:0003677
Trre15g02250 284 Pfam Homeodomain 78 131 IPR001356 GO:0003677
Trre15g02250 284 SMART HOX_1 76 137 IPR001356 GO:0003677
Trre15g02250 284 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677
Trre15g02250 284 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
Trre15g02250 284 Gene3D - 70 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02250 Trre-Chr15 18364906 18366828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02250 1 284 Homeobox Transcription Factor Family AT1G69780 63.423 6.70e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre15g02250 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02250 K09338 - gmx:100790840 464.922