Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02249 ATGGCTTTCTTTCCAACAAATTTCATGCTACAAACTTCTCATCAAGATGATCACCATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCTCCTCAAGATTACCATGGAGGAGTATCCTTTTTAGGAAAGAGATCTATGTCATTTTCAGGGATAGAACTTGGAGAAGAAGCTAATGTCGAAGAAGAATTATCGGACGATGGATCACAAATAGGGGAAAAGAAAAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAATTAGGAAACAAACTTGAACCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTTGGACTGCAACCAAGACAGATTGCTATATGGTTTCAAAACAGAAGAGCTAGGTGGAAGACAAAACAGTTGGAAAAAGATTATGATATTCTTAAAAGACAATATGATACTATTAAGGCTGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACAGAGATATTGGCTCTGAAAAGTAGAGAACCAACTGAATCAATAAACCTTAATAAAGAAACAGAAGGATCAAGCAGTAACAGAAGTGAAAACAGTTCAGATATCAAGTTGGATATTTCAACAAGGACACAAGCTATTGATGGTCCTTTATCTAATCAGCAAACAAGCAGAAACCTCTTTCCATCTTCTTCTAGACCAACAGGAGTTCCTCATCAGCTCTTTCAAACCAATTCAAGACAAGACAACATTCAGTGTCAAAAGATTGATCATATGGTCAAAGAAGAGAGTTTGAGTAACATGTTTTGTGCCATTGATGAACAATCTGGATTATGGCCATGGTTGGAGCAGCAACATTTCAATTGA 852 0.3732 MAFFPTNFMLQTSHQDDHHHQPPPSLNSIITSCAPQDYHGGVSFLGKRSMSFSGIELGEEANVEEELSDDGSQIGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQYDTIKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSDIKLDISTRTQAIDGPLSNQQTSRNLFPSSSRPTGVPHQLFQTNSRQDNIQCQKIDHMVKEESLSNMFCAIDEQSGLWPWLEQQHFN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02249 283 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Trre15g02249 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 254 IPR045224 GO:0003700
Trre15g02249 283 FunFam Homeobox-leucine zipper protein ATHB-13 69 136 - -
Trre15g02249 283 Pfam Homeobox associated leucine zipper 132 172 IPR003106 GO:0006355|GO:0043565
Trre15g02249 283 SMART HOX_1 75 136 IPR001356 GO:0003677
Trre15g02249 283 SUPERFAMILY Homeodomain-like 70 134 IPR009057 -
Trre15g02249 283 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Trre15g02249 283 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Trre15g02249 283 MobiDBLite consensus disorder prediction 177 236 - -
Trre15g02249 283 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Trre15g02249 283 Coils Coil 124 172 - -
Trre15g02249 283 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Trre15g02249 283 CDD homeodomain 77 133 IPR001356 GO:0003677
Trre15g02249 283 MobiDBLite consensus disorder prediction 180 236 - -
Trre15g02249 283 Gene3D - 69 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02249 Trre-Chr15 18364906 18366828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02249 1 283 Homeobox Transcription Factor Family AT1G69780 63.636 8.32e-122 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre15g02249 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02249 K09338 - gmx:100801479 468.003