Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02247 ATGATGGATGTGGAGAAGGAGAAGCAACAGGGCAAGGCAGAATCGTCTAAGAAGAAGGAGCGTCGTATGGTGACTTGGACTCAAGAGGAAGATGAGATACTAAGAGAACAGATTGGAATTAATGGAACTGAAAATTGGGCGATTATTGCATCCAAATTCAAGGACAAAACAACAAGACAGTGCAGAAGAAGATGGTACACATATTTGAATTCTAATTTCAAGAAAGGTGGATGGACACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAGTATTTGGGAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAATCGTTTCTCCACACTCCGTAAGAAGAGAGAAAAATCTGCAGCATTAGAAAAAGAGAACATCATTCCATACATTGATTCAAATAGCAAGAGGAATATTTCTCATCAAGGTTATAATACACATGCAATGTCAGAATCTTCTATGCCAGTTAAAAAAATGAGGAGGGCCCATATTTCTGATGGTGCAAACAAGATCATATTTGGAGATAGATCACATTTGCGAAATGCAGTTTCAACAAATCAGCAGCCAAGGGCACCATTTTCCGAATTAGCTAAAAAATCCAATTGTGTGAACAATCTTCCAGTCAGACATCATAGTTTCAATGACAAGTTCAACAGTTCCGGCCAAAATAACAAAAGTCAGCTAAAAAAGGATTATCCGAAGATTAGTGCATTGATTCAAATAATTGATTCAGAGAACATGGAAAATTTATGGAAACCACTTCTAGAGTTTCTGAACAGAACGGATATCATTGGAGAAAAAATTGAAGTTTTACAACTTGTAAGTTGTATGGTCAAGGAGTTGAAGAGTAGTAATGAGAGAGGCCATTCTTGCTTGAGGCAAATGGAACCAGACGAAGATTCTCCTGGAAGTTCTGAATACAGTTCAGGATCAACTCTGCTGCCTAAGTCCACCGGTACTGCTGATAATTTGGAAAGCTCACTGAATCTGGATATTGGAACTGAAATGAAAGCTACACATTTGGAAGGTTCACTGAATCAGGATATTGGAACTGAAATGAAAGCTACACATTTGGAAAGCTCACTGAATCAGGATTCTGGAACTGAAATGAAAGCGGCACATTTGGAAAACTCACTGAATCAGGATATTGGAACTGAAATGAAAGCTACACAATTTGAAGTTAAAAAAGAAGAGTGTGAAGGTGTGGAAGGGGTTCTTTCTACTGGAAAAGTGGAACAAGATATGATGCCACATGGTGAGGAACAGATAAATGCATCGTCAAGAATGGAGTGTTCCCCTATTCAAGTTACCCCTATTTTCAGATCCTTGGCTGAAGGAATTCCCAGCCCAGAATTTTCAGAAAGTGAAAAGAACTTCCTGAGGAAAACACTGGGAGTAGAATCTCCATCTATCAACACAAGTTTCAGTCCGTTCAAATTGCCACCATGCATAAGATCCCTTCAATATTGA 1491 0.3897 MMDVEKEKQQGKAESSKKKERRMVTWTQEEDEILREQIGINGTENWAIIASKFKDKTTRQCRRRWYTYLNSNFKKGGWTPEEDMLLCEAQKVFGNRWTEIAKVVSGRTDNAVKNRFSTLRKKREKSAALEKENIIPYIDSNSKRNISHQGYNTHAMSESSMPVKKMRRAHISDGANKIIFGDRSHLRNAVSTNQQPRAPFSELAKKSNCVNNLPVRHHSFNDKFNSSGQNNKSQLKKDYPKISALIQIIDSENMENLWKPLLEFLNRTDIIGEKIEVLQLVSCMVKELKSSNERGHSCLRQMEPDEDSPGSSEYSSGSTLLPKSTGTADNLESSLNLDIGTEMKATHLEGSLNQDIGTEMKATHLESSLNQDSGTEMKAAHLENSLNQDIGTEMKATQFEVKKEECEGVEGVLSTGKVEQDMMPHGEEQINASSRMECSPIQVTPIFRSLAEGIPSPEFSESEKNFLRKTLGVESPSINTSFSPFKLPPCIRSLQY 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02247 496 CDD SANT 78 119 IPR001005 -
Trre15g02247 496 MobiDBLite consensus disorder prediction 1 22 - -
Trre15g02247 496 Gene3D - 14 74 - -
Trre15g02247 496 FunFam Transcription factor MYB124 18 74 - -
Trre15g02247 496 PANTHER MYB PROTEIN-RELATED 25 158 - -
Trre15g02247 496 CDD SANT 25 69 IPR001005 -
Trre15g02247 496 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Trre15g02247 496 SUPERFAMILY Homeodomain-like 22 116 IPR009057 -
Trre15g02247 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Trre15g02247 496 SMART sant 22 71 IPR001005 -
Trre15g02247 496 SMART sant 74 122 IPR001005 -
Trre15g02247 496 Gene3D - 76 149 - -
Trre15g02247 496 MobiDBLite consensus disorder prediction 308 331 - -
Trre15g02247 496 Pfam Myb-like DNA-binding domain 26 86 - -
Trre15g02247 496 ProSiteProfiles Myb-like domain profile. 18 69 IPR001005 -
Trre15g02247 496 MobiDBLite consensus disorder prediction 296 331 - -
Trre15g02247 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 69 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02247 Trre-Chr15 18322017 18328602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02247 13 300 MYB Transcription Factor Family AT2G02820 49.682 1.48e-88 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre15g02247 Myb_DNA-bind_6 5.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02247 K09422 - gmx:100803361 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02247 15 18322017 18328602 Trre15g02247 15 18322017 18328602 ECH
Trre15g02247 15 18322017 18328602 Trre9g02605 9 32063996 32067908 PCT