Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02240 ATGTCGCATTTACAATTACAGTTACACTCACAAGCACCACCATCATCATCTCGTTCTTCTCTTTCTTCCCTCAAGCTTTTCACAAACAACAAAAACTATTTCTCTCCAACTAACTCTCTTCCTTTCAAACCTCTCACTATCAGATGCCGCCACTCTGACATCTTCGAAACCAGAACCAATGTTTCCTCACCAAACCCTAACCCTTCAGTTGGAGCTTTGCCACCTAGGGTTTATGTTGGTCATTCCATTTATAAAGGGAAGGCTGCTCTCACTATCACTCCAAGACCACCAGAATTCGCGCCTTTGGAGTCAGGAGCATATAAGATAACTAGGGATGGTTACGTGCTGCTTCAGCTTGCTCCCGCTCTTGGACCCCGACTATATGATTGGAATAGTAAACAGGTGTTCTCGTTATCTGTGGCTGAAATGGGAAGTGTGATTAGCCTTGGTGGAAGGGAGTCCTGTGAATTTTTTCATGATCCTTTTATGGGAAAAAGCGATGAAGGCAAAGTCAGAAAGGTTTTGAAGGTTGAGCCTTTCCCGGATGGTTCTGGTTTCTTCTTTAACCTCAGTGTTCAAAACAGGATTATAAACGCGGATGAAAGTATCAATATCCCTATATCGAAAGCAGAGTTGGCAGTTCTGCGCTCAATTTTCAAGTATATCATGCCGTACCTTCTAGGTTGGCATACCTTTGCAAACTCGATAAGTCCGGAGTATTCTGTCGTGGCGAACAATGCTACTAATCCGACATATGGAGGAGACTATGAATGGAACAGATAG 783 0.4342 MSHLQLQLHSQAPPSSSRSSLSSLKLFTNNKNYFSPTNSLPFKPLTIRCRHSDIFETRTNVSSPNPNPSVGALPPRVYVGHSIYKGKAALTITPRPPEFAPLESGAYKITRDGYVLLQLAPALGPRLYDWNSKQVFSLSVAEMGSVISLGGRESCEFFHDPFMGKSDEGKVRKVLKVEPFPDGSGFFFNLSVQNRIINADESINIPISKAELAVLRSIFKYIMPYLLGWHTFANSISPEYSVVANNATNPTYGGDYEWNR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02240 260 MobiDBLite consensus disorder prediction 1 21 - -
Trre15g02240 260 Pfam Whirly transcription factor 83 218 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre15g02240 260 Gene3D Transcriptional Coactivator Pc4; Chain A 71 246 IPR009044 GO:0003677|GO:0006355
Trre15g02240 260 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 15 260 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre15g02240 260 SUPERFAMILY ssDNA-binding transcriptional regulator domain 75 260 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02240 Trre-Chr15 18255085 18259320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02240 43 260 Whirly Transcription Factor Family AT1G14410 65.753 1.26e-105 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Trre15g02240 Whirly 2.4e-58 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02240 K26559 - gmx:100789252 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02240 15 18255085 18259320 Trre15g02240 15 18255085 18259320 ECH
Trre9g02583 9 31352110 31355776 Trre15g02240 15 18255085 18259320 PCT