Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02239 ATGTTCCACACTCCTTTTCGCTTACTTAATTTTCCATGCACAAAGCTTCCACATCTAAACATTCACATCTTCCTTTCCCTTCGTTCACCAACCATCCTTTGTTCATTCAATGATGATTCCTTTTCCATCCCTAAATCAACCCAGTTTGGTTACAGTCCTCCAGAAGATCTATTTGGGCTGGAGGTGGAACTCAAGCCAAGGAAAGCTAACTCTCATACAAGAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGAGAGCTACCTTGTCCAAGTTGCCGAGGAAGGGGTTATACTCCTTGTACAGAATGTGGAATAGAAAGATCTAGGTCAGACTGTCCAATATGTAATGGAAAGGGTTTACTGACTTGCCACCAGTGCTCTGGAGATTGTGTTATATGGGAAGAATCAATTGACGAACGACCATGGGAGAGAGCTCAATCAATATCACCACTCAAAGTGAAGGAAGACGATGAAGTTGACAAATTAGACATAAAGCTTGATGCAAAGAAAAAATCCAAGCGTATTTACCAGTCACCATCTCCTGAAGTCGGATTAAAGATTAGTCGTTCATTAAAAAGTCTAAATGCTAAAACTGGTCTATTTAGCAAACGAATGAAGATCATCCACCAGGATCCAATTCTTCAGGCACAAAGAGTTGATGCTATTAAGAAAGCTAAGAGAACTGTTTCAGCAAGAATGCATGCTTCCAAAACTATGAAAGAATTCTTTAGTGATCCAATAAATCGTCAAAAAAGGAGCATGGCCATGAAAGGAGTGAAATTCTACTGCCAAAACTGCGGACGTGAAGGACATAGGAGACACTATTGTCCAGAACTCAAGGATGGTTTGGTTGATAGGAGATTCACATGTAAGCTATGTGGTGAAAAGGGGCATAACCGAAGGACATGCATTAAGTTAAGGATAAGCCATAGTGATGGGAGAGTTATAAAACACCATCAATGTAAAATATGTCGACAATATGGCCATAACAGAATGACATGCCCTCAAGTTGTTTCGAATAAAAGAACGGACACAACATCTCAAAGAATATACAAATGTCGATTGTGCCAGAAAGAGGGACACAATATTAGAACATGTCCTAGAAAAATAGTTGGTACTGAACATTCTCAAAAGTAA 1146 0.397 MFHTPFRLLNFPCTKLPHLNIHIFLSLRSPTILCSFNDDSFSIPKSTQFGYSPPEDLFGLEVELKPRKANSHTREPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPICNGKGLLTCHQCSGDCVIWEESIDERPWERAQSISPLKVKEDDEVDKLDIKLDAKKKSKRIYQSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHQDPILQAQRVDAIKKAKRTVSARMHASKTMKEFFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDGLVDRRFTCKLCGEKGHNRRTCIKLRISHSDGRVIKHHQCKICRQYGHNRMTCPQVVSNKRTDTTSQRIYKCRLCQKEGHNIRTCPRKIVGTEHSQK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02239 381 Pfam Zinc knuckle 354 370 IPR025829 -
Trre15g02239 381 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 55 306 - -
Trre15g02239 381 SUPERFAMILY Retrovirus zinc finger-like domains 263 308 IPR036875 GO:0003676|GO:0008270
Trre15g02239 381 ProSiteProfiles Zinc finger CCHC-type profile. 266 281 IPR001878 GO:0003676|GO:0008270
Trre15g02239 381 SUPERFAMILY Retrovirus zinc finger-like domains 317 372 IPR036875 GO:0003676|GO:0008270
Trre15g02239 381 Gene3D - 262 309 - -
Trre15g02239 381 SMART c2hcfinal6 323 339 IPR001878 GO:0003676|GO:0008270
Trre15g02239 381 SMART c2hcfinal6 355 371 IPR001878 GO:0003676|GO:0008270
Trre15g02239 381 SMART c2hcfinal6 265 281 IPR001878 GO:0003676|GO:0008270
Trre15g02239 381 SMART c2hcfinal6 292 308 IPR001878 GO:0003676|GO:0008270
Trre15g02239 381 Gene3D - 319 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02239 Trre-Chr15 18248855 18253305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02239 37 379 C2H2 Transcription Factor Family AT5G20220 62.890 8.03e-157 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02239 - - cam:101493936 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02239 15 18248855 18253305 Trre15g02239 15 18248855 18253305 ECH