Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02238 ATGGAGCTTGCACTTGTGAAAAATGAATTAAGTCCAAGAAGTAATAGATTGCTCATGTTGGAAACTGATTCTGTTGTAACTACTAAATGTGTCAAAAGGCGGCGAAGAGATTCGTCTATTGTACAACAAGGTGATGTATCAGAAATACAGCAGCCATTGAGTGGACAAGCAACTACTGTGAAGAGAAGCTCAAAGTTTAGAGGTGTTAGCAGACATAGGTGGACTGGAAGGTATGAAGCTCATTTATGGGATAAAGGAACATGGAATCCAACTCAAAAGAAAAAAGGAAAGCAAGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTTAAGTACTGGGGAACATCAACTTTTACAAATTTTCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGATAAATATGACCAAAGAAGAGTATCTTGCTTCTTTGAGAAGGAGGAGCAGTGGTTTTTCTAGAGGTGTTTCAAAATATAGAGGGGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTCGGCAACAAGTATCTCTACCTCGGGACTTATGGTACACAAGAAGAGGCGGCTCGTGCGTACGATATCGCAGCAATTGAATACCGAGGAATAAATGCAGTAACAAACTTTGATTTAAGCACCTACATTAGATGGTTAAGGCCAGGACCAAATTCAACTACTTCACAAGAACAAAAGCAAAACACAGAACTTCAAGTACCCTTTGCAGCCACTAATTCAATCCAAACAAGAACAAACATTGATGCATCGAACTCCAACATCAATCCGGAAAAGCTTTTGCAAGTTGAAACTACAAAGAAGCGAGACTTTTCCGGCTCTATGATGACACCTTTATGTTCTTATAATAAACCAGCTTCACCAACAGCATTAGGACTTCTACTAAAATCGTCGGTATTTAGAGAACTAATGCAGAGAAACCTGAATTGTTCTAGTGAAGACGAAGAAGTTGAATTGAAATATCCTCAAGAAAGTATTGAAGGGGTTTTTGATATTGAAAACAATAGTAGTAACACTTATTTGTGCTCTTCTAATATCAACAAATTACCTAACTTGGTGTCATCAGAAGAGAGGCCATCGCCTATGTATCATGGAACTATGCAATCCATATCAATGTTCGAATCCCGGTTGGGAAAAGTGTCCACATTTAGTACACAACAGTGCCTCGAATAG 1221 0.389 MELALVKNELSPRSNRLLMLETDSVVTTKCVKRRRRDSSIVQQGDVSEIQQPLSGQATTVKRSSKFRGVSRHRWTGRYEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMINMTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGPNSTTSQEQKQNTELQVPFAATNSIQTRTNIDASNSNINPEKLLQVETTKKRDFSGSMMTPLCSYNKPASPTALGLLLKSSVFRELMQRNLNCSSEDEEVELKYPQESIEGVFDIENNSSNTYLCSSNINKLPNLVSSEERPSPMYHGTMQSISMFESRLGKVSTFSTQQCLE 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02238 406 SUPERFAMILY DNA-binding domain 163 224 IPR016177 GO:0003677
Trre15g02238 406 ProSiteProfiles AP2/ERF domain profile. 164 222 IPR001471 GO:0003700|GO:0006355
Trre15g02238 406 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 42 285 - -
Trre15g02238 406 SUPERFAMILY DNA-binding domain 64 130 IPR016177 GO:0003677
Trre15g02238 406 Gene3D AP2/ERF domain 163 224 IPR036955 GO:0003700|GO:0006355
Trre15g02238 406 Gene3D AP2/ERF domain 64 130 IPR036955 GO:0003700|GO:0006355
Trre15g02238 406 FunFam AP2-like ethylene-responsive transcription factor 163 224 - -
Trre15g02238 406 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Trre15g02238 406 PRINTS Ethylene responsive element binding protein signature 204 224 IPR001471 GO:0003700|GO:0006355
Trre15g02238 406 CDD AP2 163 224 IPR001471 GO:0003700|GO:0006355
Trre15g02238 406 SMART rav1_2 65 134 IPR001471 GO:0003700|GO:0006355
Trre15g02238 406 SMART rav1_2 164 228 IPR001471 GO:0003700|GO:0006355
Trre15g02238 406 ProSiteProfiles AP2/ERF domain profile. 65 128 IPR001471 GO:0003700|GO:0006355
Trre15g02238 406 Pfam AP2 domain 64 120 IPR001471 GO:0003700|GO:0006355
Trre15g02238 406 Pfam AP2 domain 163 214 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02238 Trre-Chr15 18245398 18247960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02238 61 271 AP2-EREBP Transcription Factor Family AT5G17430 58.140 4.59e-80 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Trre15g02238 AP2 3.8e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02238 - - gmx:100798483 565.844