Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02237 ATGGAGCTTGCACTTGTGAAAAATGAATTAAGTCCAAGAAGTAATAGATTGCTCATGTTGGAAACTGATTCTGTTGTAACTACTAAATGTGTCAAAAGGCGGCGAAGAGATTCGTCTATTGTACAACAAGGTGATGTATCAGAAATACAGCAGCCATTGAGTGGACAAGCAACTACTGTGAAGAGAAGCTCAAAGTTTAGAGGTGTTAGCAGGCATGTGATGATACATAGGTGGACTGGAAGGTATGAAGCTCATTTATGGGATAAAGGAACATGGAATCCAACTCAAAAGAAAAAAGGAAAGCAAGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTTAAGTACTGGGGAACATCAACTTTTACAAATTTTCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGATAAATATGACCAAAGAAGAGTATCTTGCTTCTTTGAGAAGGAGGAGCAGTGGTTTTTCTAGAGGTGTTTCAAAATATAGAGGGGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTCGGCAACAAGTATCTCTACCTCGGGACTTATGGTACACAAGAAGAGGCGGCTCGTGCGTACGATATCGCAGCAATTGAATACCGAGGAATAAATGCAGTAACAAACTTTGATTTAAGCACCTACATTAGATGGTTAAGGCCAGGACCAAATTCAACTACTTCACAAGAACAAAAGCAAAACACAGAACTTCAAGTACCCTTTGCAGCCACTAATTCAATCCAAACAAGAACAAACATTGATGCATCGAACTCCAACATCAATCCGGAAAAGCTTTTGCAAGTTGAAACTACAAAGAAGCGAGACTTTTCCGGCTCTATGATGACACCTTTATGTTCTTATAATAAACCAGCTTCACCAACAGCATTAGGACTTCTACTAAAATCGTCGGTATTTAGAGAACTAATGCAGAGAAACCTGAATTGTTCTAGTGAAGACGAAGAAGTTGAATTGAAATATCCTCAAGAAAGTATTGAAGGGGTTTTTGATATTGAAAACAATAGTAGTAACACTTATTTGTGCTCTTCTAATATCAACAAATTACCTAACTTGGTGTCATCAGAAGAGAGGCCATCGCCTATGTATCATGGAACTATGCAATCCATATCAATGTTCGAATCCCGGTTGGGAAAAGTGTCCACATTTAGTACACAACAGTGCCTCGAATAG 1233 0.3893 MELALVKNELSPRSNRLLMLETDSVVTTKCVKRRRRDSSIVQQGDVSEIQQPLSGQATTVKRSSKFRGVSRHVMIHRWTGRYEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMINMTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGPNSTTSQEQKQNTELQVPFAATNSIQTRTNIDASNSNINPEKLLQVETTKKRDFSGSMMTPLCSYNKPASPTALGLLLKSSVFRELMQRNLNCSSEDEEVELKYPQESIEGVFDIENNSSNTYLCSSNINKLPNLVSSEERPSPMYHGTMQSISMFESRLGKVSTFSTQQCLE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02237 410 FunFam AP2-like ethylene-responsive transcription factor 167 228 - -
Trre15g02237 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 42 289 - -
Trre15g02237 410 SUPERFAMILY DNA-binding domain 167 228 IPR016177 GO:0003677
Trre15g02237 410 SUPERFAMILY DNA-binding domain 73 134 IPR016177 GO:0003677
Trre15g02237 410 Gene3D AP2/ERF domain 167 228 IPR036955 GO:0003700|GO:0006355
Trre15g02237 410 Gene3D AP2/ERF domain 64 134 IPR036955 GO:0003700|GO:0006355
Trre15g02237 410 ProSiteProfiles AP2/ERF domain profile. 65 132 IPR001471 GO:0003700|GO:0006355
Trre15g02237 410 CDD AP2 167 228 IPR001471 GO:0003700|GO:0006355
Trre15g02237 410 ProSiteProfiles AP2/ERF domain profile. 168 226 IPR001471 GO:0003700|GO:0006355
Trre15g02237 410 SMART rav1_2 65 138 IPR001471 GO:0003700|GO:0006355
Trre15g02237 410 SMART rav1_2 168 232 IPR001471 GO:0003700|GO:0006355
Trre15g02237 410 Pfam AP2 domain 167 218 IPR001471 GO:0003700|GO:0006355
Trre15g02237 410 Pfam AP2 domain 64 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02237 Trre-Chr15 18245398 18247960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02237 61 275 AP2-EREBP Transcription Factor Family AT5G17430 57.078 8.09e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre15g02237 AP2 5e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02237 - - gmx:100798483 560.066