Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02227 ATGTTGAATGCCAATGTATTAGAGAGTAAGGAATTTTGGAAGGAACAATCAACTGAGTTTGATGCATATTGGCAGGAAAGGGCTATAGCAGCAAAACAATACAATCAGGCAGCTTATACCCCTGATCCATATGCTGTCTCTGGCAACCTAACTGCTTCTATTACTGAAATCATTGTTGGAAAGAACGCAAGAAGGAACCTTAGGGGAAACAAAGGGGGAAAATGTCTGGCCACAAACCCCATTGACAGATGCTGGAGGTGTGACCCAAAATGGGCTGATAACCGACAAAAACTAGCCGATTGTGTCCAAGGATTCGGCAGAAACACTCGTGGAGGTAAAGGAGGTCCAATCTACGTTGTCACTGATCCTTCTGACAACGATTTATTGGACCCCAAACTCGGCACCCTCCGCCACGCAGTCACACGTAATGGACCCCTTTGGATCACATTCGCTCGCAGCATGCTCATTACACTACAACAAGAACTTATCATGAATAGTGACAAGACTATTGATGGTAGAGGAGTCGATGTTTTCATTGCCAACGGTGCCGGTATTACCATTCAATCTGTTAAGAATGTTATCATCCATGGAATTAAGATTTACAACATTCAAGTACGCGAAGGTGGTATGATTAGAGATTCCGAGACCCATTATGGTTTGAGGACTAGGAGTGATGGTGATGGTATTTCCATCTTCGGTTCTAGTAATATTTGGATCGATCATGTTTCCATGAGAAATTGTACTGATGGTTTGATTGATGCAATCATGGGATCTACTGCTATTACCATTTCCAACAGTCACTTCACAGACCATAATGAGGTGATGCTTTTTGGTGCTAGTCCCGTTCACACCGATGACAAGATCATGCAAATCACATTAGCATTCAACCATTTTGGAAAGAGATTAGTACAAAGGATGCCAAGGGCAAGATTTGGTTTTATACATTGTGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGTCAGAACCCTACAATTATCAGTGAGGGTAACAGATTCATTGGCCCAGAAAACAAATTCGTAGGGAAAGACCTTATTAATTCTAAAGAAGTAACGAAGAGAGAATACACCGAAGAAAGTGAATGGAAAAACTGGCAATGGAGATCAGTCAACGATGAATTTTTGAACGGCGCTTACTTTATTCAATCTGGACCAGAGCTAAATGATAGACCATTTTCAAGGCAAGACATGATAACAGCTAAACCAGGAAGTTATGTTGGAAGACTTACACGATTTGCCGGAAACCTACGATGCAGTGTCGGTAAACCTTGTTAG 1308 0.4167 MLNANVLESKEFWKEQSTEFDAYWQERAIAAKQYNQAAYTPDPYAVSGNLTASITEIIVGKNARRNLRGNKGGKCLATNPIDRCWRCDPKWADNRQKLADCVQGFGRNTRGGKGGPIYVVTDPSDNDLLDPKLGTLRHAVTRNGPLWITFARSMLITLQQELIMNSDKTIDGRGVDVFIANGAGITIQSVKNVIIHGIKIYNIQVREGGMIRDSETHYGLRTRSDGDGISIFGSSNIWIDHVSMRNCTDGLIDAIMGSTAITISNSHFTDHNEVMLFGASPVHTDDKIMQITLAFNHFGKRLVQRMPRARFGFIHCVNNDYTHWEMYAIGGSQNPTIISEGNRFIGPENKFVGKDLINSKEVTKREYTEESEWKNWQWRSVNDEFLNGAYFIQSGPELNDRPFSRQDMITAKPGSYVGRLTRFAGNLRCSVGKPC 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02227 435 Gene3D - 78 428 IPR012334 -
Trre15g02227 435 PRINTS Pollen allergen Amb family signature 125 150 IPR018082 -
Trre15g02227 435 PRINTS Pollen allergen Amb family signature 101 118 IPR018082 -
Trre15g02227 435 PRINTS Pollen allergen Amb family signature 161 177 IPR018082 -
Trre15g02227 435 PRINTS Pollen allergen Amb family signature 376 400 IPR018082 -
Trre15g02227 435 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Trre15g02227 435 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Trre15g02227 435 PRINTS Pollen allergen Amb family signature 225 246 IPR018082 -
Trre15g02227 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Trre15g02227 435 SMART amb_all 153 350 IPR002022 -
Trre15g02227 435 SUPERFAMILY Pectin lyase-like 79 426 IPR011050 -
Trre15g02227 435 PANTHER PECTATE LYASE 18-RELATED 32 433 IPR045032 GO:0030570
Trre15g02227 435 Pfam Pectate lyase 162 344 IPR002022 -
Trre15g02227 435 Pfam Pectate lyase, N terminus 19 67 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02227 Trre-Chr15 18197835 18199871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02227 20 435 Polysaccharide Lyase AT1G14420 59.584 0.0 516