Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02225 ATGGCGAGATCACTCAACATTTTTCTATATTTTCTTTCTTTGGCAATCATCATTCCTACGTTGAATGCCAATGTATTAGAGAGTAAGGAATTTTGGAAGGAACAATCAACTGAGTTTGATGCATATTGGCAGGAAAGGGCTGTAGAAGCAAAACAATTCAATCAGGCAGCTTATAACCCTGATCCTTATGCAGTCTCTGGCAACCTAACTGCTTCTATTACTGAAATCATTGCTGGAAAGAGTGCAAGAAGGAACCTTAGAGGAAACAAAGGGGCAGGACAATGTTTGGCCACAAACCCCATTGACAGATGCTGGAGGTGTGACCCAAAATGGGCTGATAACCGACAAAAACTAGCCGATTGTGTCCAAGGATTCGGCAGAAACACCCGTGGAGGTAAAGGCGGTCCAATCTACATTGTCAACGATCCTTCTGACAACGATTTATTGGACCCCAAACCTGGCACTCTCCGTCACGCAGTCACACGTAATGGACCCCTTTGGATCATATTCGCTCGCAGCATGCTCATTACACTACAACAAGAACTTATCATGAATAGTGACAAGACTATTGATGGTAGAGGAGTCGATGTTTTCATTGCCAACGGTGCCGGTATTACCATTCAATCTGTTAAGAATGTTATCATCCATGGAATTAAGATTTACAACATTCAAGTACGCGAAGGTGGTATGATTAGAGATTCCGAGACCCATTATGGTTTGAGGACTAGGAGTGATGGCGATGGTATTTCCATCTTTGGTTCTAGTAATATTTGGATCGATCATGTTTCCATGAGAAATTGTACCGATGGTTTGATTGATGCAATCATGGGATCTACTGCTATTACCATTTCCAACAGTCACTTCACAGACCACAATGAGGTGATGCTTTTTGGTGCTAGTCCCGTTCACACCGATGACAAGATCATGCAAATCACATTAGCATTCAACCATTTTGGAAAGAGATTAGTACAAAGGATGCCAAGGGCAAGATTTGGTTTTGTCCATTGTGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCCAGAACCCTACAATTATCAGTGAGGGTAACCGATTCATTGGCCCAGAAAACAAATTCGTAGGGAAAGACCTTATTAATTCTAAAGAAGTAACGAAGAGAGAATACACCGAAGAAAGTGAATGGAAAAACTGGCAATGGAGATCAGTCAACGATGAATTTTTGAACGGCGCTTACTTTATTCAATCTGGACCAGAGCTAAATGATAGACCATTTTCAAGGAAAGACATGATAACAGCTAAACCAGGAAGTTATGTTGGAAGGCTTACACGATTTGCCGGAAACCTACGATGCAGTGTAGGTAAACCTTGTTAG 1368 0.4159 MARSLNIFLYFLSLAIIIPTLNANVLESKEFWKEQSTEFDAYWQERAVEAKQFNQAAYNPDPYAVSGNLTASITEIIAGKSARRNLRGNKGAGQCLATNPIDRCWRCDPKWADNRQKLADCVQGFGRNTRGGKGGPIYIVNDPSDNDLLDPKPGTLRHAVTRNGPLWIIFARSMLITLQQELIMNSDKTIDGRGVDVFIANGAGITIQSVKNVIIHGIKIYNIQVREGGMIRDSETHYGLRTRSDGDGISIFGSSNIWIDHVSMRNCTDGLIDAIMGSTAITISNSHFTDHNEVMLFGASPVHTDDKIMQITLAFNHFGKRLVQRMPRARFGFVHCVNNDYTHWEMYAIGGSQNPTIISEGNRFIGPENKFVGKDLINSKEVTKREYTEESEWKNWQWRSVNDEFLNGAYFIQSGPELNDRPFSRKDMITAKPGSYVGRLTRFAGNLRCSVGKPC 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02225 455 Pfam Pectate lyase 182 364 IPR002022 -
Trre15g02225 455 Gene3D - 98 448 IPR012334 -
Trre15g02225 455 SUPERFAMILY Pectin lyase-like 99 446 IPR011050 -
Trre15g02225 455 SMART amb_all 173 370 IPR002022 -
Trre15g02225 455 PANTHER PECTATE LYASE 18-RELATED 50 453 IPR045032 GO:0030570
Trre15g02225 455 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
Trre15g02225 455 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Trre15g02225 455 PRINTS Pollen allergen Amb family signature 426 449 IPR018082 -
Trre15g02225 455 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Trre15g02225 455 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Trre15g02225 455 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Trre15g02225 455 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Trre15g02225 455 PRINTS Pollen allergen Amb family signature 396 420 IPR018082 -
Trre15g02225 455 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02225 Trre-Chr15 18186904 18189133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02225 7 455 Polysaccharide Lyase AT1G14420 57.082 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02225 K01728 - gmx:100798579 704.901