Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02220 ATGGGGTTAGATGGTGTGAATGGTAAGGTGATAGAGTCCTTGGATGTGACTAAATCAAAAGGGAGGAAGAAAAAGAAGTTACAAGATAGGGTAATGGAAGATGAAGAAAATGAAACTGGTTGTTGGCATAGCTTTAGGTTCATTGGTGGCTGCATTTCTTCAAGATCCAAGGTTGATAGTTCTGTTAGTGGTACCGGTACTAATTATGCTGAAAGTAAATCAACTCTTGATACAAGTAGAGACCAGCCATCGGTTCCGGTAGTCTCTTCGACGACGACGACTACTACTACTACCACTACTACTAGTAATGCTGAAAGCAACTCTTCTACTTCGAAAATTGAAGAAGAGCTTAAAGTTGCTTCCAGGCTGCGAAAGTTCTGTTTCAATGACCTTAAGTTGGCAACAAGAAATTTTCGGCCCGAGAGTCTTCTTGGTGAAGGCGGGTTTGGTTGTGTGTTCAAAGGATGGATTGAAGAAAATGGGACTGCTCCGGTGAAACCTGGCACGGGACTTACTGTTGCTGTCAAAACCCTAAATCATGACGGGCTCCAGGGGCATAAAGAATGGCTGGCTGAAGTAAATTATCTTGGTGATTTAGTTCATCAAAACCTTGTCAAACTTATAGGCTACTGTATTGAAGATGATCAAAGGTTGCTGGTATACGAATTTATGCCTCGAGGAAGCCTGGAAAACCACTTGTTTAGGAGATCCTTGCCACTTCCGTGGTCCATAAGGATGAAAATTGCGCTAGGAGCTGCAAAGGGACTTGCTTTTCTTCATGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAGAGTATAATGCCAAACTCTCTGACTTTGGACTTGCAAAAGATGGGCCAGAGGGTGATAAAACTCATGTGTCTACCCGAGTTATGGGAACTTATGGATACGCAGCACCAGAATATGTTATGACAGGGCATCTTACATCAAGAAGTGATGTGTATAGTTTTGGAGTGGTACTACTTGAGATGATAACCGGGCGAAGATCCATGGACAAAAACCGGCCAAATGGCGAACATAACCTTGTAGAATGGGCTAGACCGCATCTAGGAGAAAGAAGAAGGTTCTATAGGTTGATAGACCCTCGATTGGAAGGCCACTTCTCGATAAAAGGAGCTCAAAAAGCCGCCCATTTGGCTGCTCACTGCCTTAGCCGAGATCCAAAAGCAAGACCACTAATGAGTGAAGTCGTAGAAGCTTTGAAGCCTCTCCCAAACCTAAAGGATATGGCTAGTTCATCATACTATTTCCAGACGATGCAAGCTGACCGATTTAGTGCAAGTCCAAATACTCGAAATGGTAGAACACAAGGAGGATTTGTCCGAAATGGACAACAACAAAGGAGCCTTTCGATATCACATGGTACTCATGCTTCTCCATTTCGCCATCAGTATCCTCAACATTCACCAAAGCCAACTGGAAAAGCGCAGAGTTAA 1488 0.4321 MGLDGVNGKVIESLDVTKSKGRKKKKLQDRVMEDEENETGCWHSFRFIGGCISSRSKVDSSVSGTGTNYAESKSTLDTSRDQPSVPVVSSTTTTTTTTTTTSNAESNSSTSKIEEELKVASRLRKFCFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNYLGDLVHQNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMITGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAHLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFSASPNTRNGRTQGGFVRNGQQQRSLSISHGTHASPFRHQYPQHSPKPTGKAQS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02220 495 Gene3D Transferase(Phosphotransferase) domain 1 224 440 - -
Trre15g02220 495 FunFam Probable serine/threonine-protein kinase PBL8 224 439 - -
Trre15g02220 495 ProSiteProfiles Protein kinase domain profile. 138 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02220 495 MobiDBLite consensus disorder prediction 56 110 - -
Trre15g02220 495 PANTHER OS01G0588500 PROTEIN-RELATED 101 421 - -
Trre15g02220 495 CDD STKc_IRAK 144 421 - -
Trre15g02220 495 MobiDBLite consensus disorder prediction 56 113 - -
Trre15g02220 495 MobiDBLite consensus disorder prediction 443 480 - -
Trre15g02220 495 Pfam Protein tyrosine and serine/threonine kinase 142 418 IPR001245 GO:0004672|GO:0006468
Trre15g02220 495 MobiDBLite consensus disorder prediction 443 495 - -
Trre15g02220 495 ProSitePatterns Protein kinases ATP-binding region signature. 144 176 IPR017441 GO:0005524
Trre15g02220 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Trre15g02220 495 FunFam Serine/threonine-protein kinase BIK1 105 223 - -
Trre15g02220 495 Gene3D Phosphorylase Kinase; domain 1 112 223 - -
Trre15g02220 495 SUPERFAMILY Protein kinase-like (PK-like) 117 418 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02220 Trre-Chr15 18153689 18156696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02220 107 418 Glycoside Hydrolase AT3G07070 56.467 8.13e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre15g02220 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02220 - - gmx:100807510 878.626