Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02206 ATGTTTGCTTGTTATCCATTATCAGGTCCGATACCGGCAGAGATCAGCTATCTTAATCAACTTGATCTTCTAGTATTGTCAAATAATACATTTAGTGGATCTTTTCCGTCCAAACTGCTCAACATGTCATCACTGGTTTCAAACTTTCAGGCAGATTCATGTGGAATTGTTGGTAATATTCCCTTAGAAGTTGGTAACATGAGTAACTTGCAACTTTTATCATTATCCATGAATGATATAAGTGGACCAATACCTGGTACATTCAAAGGGTTACAAAAACTTCAGGGATTGTCCCTTAGCAACAATAGACTACAAGGATCGTTTATTGAGGAGCTTTGTGAAACTAAGAGATTGGAAGAGTTGTATCTTGATAATAATAAGCTTTCTGGAGTTTTACCAACATGTTTGGGGAATATGACCTCCCTTAAAAAATTAGACATAGCATCTAATAGTTTGAACTCTAGAGTACCTTCCTCTCTTTGGAGTCTTAAAGATATATTACAAGTAAATTTGTCCTCTAATGCATTCATTGGTTACCTTCCACCTGAGATTTGGAATTTGAGGGCAATTATACTTTTCGATCTATCAAGAAATCAAATTTCAGGAAAGATTCCTGCAACGGTCAGTTCCTTAACAACTTTGCAGAATCTGTCCTTAGCTCATAATAAACTGATGGGATCAATTCCCAAATCACTTGATCAAATGGTAAGCTTGATTTCCTTGGACTTGTCCCAAAATATGCTAACAGGTGTTATTCCAAAATCCTTAGAATCACTTTTGTATCTTCAAAACATCAACTTCTCATATAACAGATTACAAGGAGAGATTCCTGATGGTAGAGTTTTCAAAAACTTCACGGCTCAATCATTTATGCATAATGAAGCACTCTGTGGTAATCCTCGCCTACAAGTACTTTTGTGCGATAATCAGGTTAAGAAAAGTTCAACAGAAAAGAAGTTGTTACTCAAATGCATAACTCCCATTGTTGTGTCAACCATTTTGATTGTTGCAAGCATCATAATTTTGATAGTTAAGAAAAGGAAAAAGGTTGTAAATACTCTTGAAAGGGGTTTATCAACTTTAGGAGCTCCAAGAAGAATATCCTATTATGAACTTGTGCAAGCAACTAATGGATTCAATGAGAGACAATCTAAAACACATACTCAGACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAAGGGAATTGTTTCTGTCAAAGGAGATGTATACAGCTATGGCATTATGCTAATGGAAATCTTCACAAGAAGAAAGCCAACAGATGATATATTTGGTGCAGAACTAAGTTTGAAAACATGGATCAGTCAATCATTGCCGAATTCAATTATGGAGGTCCTGGATTCTAATTTAGTCCAACAATATGGGGAACAAATTGATGGCATATTGACTTACATGTCAACTATTTTTGGTTTAGCCCTGAATTGTTGCGAAGATTCACCTGAAGCAAGAATTAATATGGTAGATGTTACTGCGTCGCTAATCAAAATCAAGACTTTGGTTGTTGGCGCAAATAGGGCCTAG 1551 0.3598 MFACYPLSGPIPAEISYLNQLDLLVLSNNTFSGSFPSKLLNMSSLVSNFQADSCGIVGNIPLEVGNMSNLQLLSLSMNDISGPIPGTFKGLQKLQGLSLSNNRLQGSFIEELCETKRLEELYLDNNKLSGVLPTCLGNMTSLKKLDIASNSLNSRVPSSLWSLKDILQVNLSSNAFIGYLPPEIWNLRAIILFDLSRNQISGKIPATVSSLTTLQNLSLAHNKLMGSIPKSLDQMVSLISLDLSQNMLTGVIPKSLESLLYLQNINFSYNRLQGEIPDGRVFKNFTAQSFMHNEALCGNPRLQVLLCDNQVKKSSTEKKLLLKCITPIVVSTILIVASIIILIVKKRKKVVNTLERGLSTLGAPRRISYYELVQATNGFNERQSKTHTQTLATIGYLAPEYGSKGIVSVKGDVYSYGIMLMEIFTRRKPTDDIFGAELSLKTWISQSLPNSIMEVLDSNLVQQYGEQIDGILTYMSTIFGLALNCCEDSPEARINMVDVTASLIKIKTLVVGANRA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02206 516 SMART LRR_typ_2 67 90 IPR003591 -
Trre15g02206 516 SMART LRR_typ_2 117 138 IPR003591 -
Trre15g02206 516 SMART LRR_typ_2 235 258 IPR003591 -
Trre15g02206 516 SMART LRR_typ_2 91 116 IPR003591 -
Trre15g02206 516 SMART LRR_typ_2 139 163 IPR003591 -
Trre15g02206 516 Pfam Leucine Rich Repeat 237 259 IPR001611 GO:0005515
Trre15g02206 516 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 385 501 - -
Trre15g02206 516 Pfam Leucine rich repeat 66 104 IPR001611 GO:0005515
Trre15g02206 516 Pfam Leucine rich repeat 117 175 IPR001611 GO:0005515
Trre15g02206 516 SUPERFAMILY L domain-like 53 300 - -
Trre15g02206 516 Gene3D Transferase(Phosphotransferase) domain 1 351 511 - -
Trre15g02206 516 Gene3D Ribonuclease Inhibitor 3 308 IPR032675 -
Trre15g02206 516 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 14 311 - -
Trre15g02206 516 SUPERFAMILY Protein kinase-like (PK-like) 386 503 IPR011009 -
Trre15g02206 516 Pfam Protein tyrosine and serine/threonine kinase 380 501 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02206 Trre-Chr15 18024408 18028759 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02206 392 516 Receptor kinase-like Gene Family AT3G47570 36.000 9.41e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre15g02206 PK_Tyr_Ser-Thr 3.7e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02206 - K13420 tpra:123895878 459.144