Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02196 ATGTCATCACTGAAAGGCTTGGGAATTGAACAAAATCACCTTTCAGGCATAATTCAAACAAAAATTGGATATAGCCTTCCTAACTTGCAATATCTACAGTTGTACGACAACAACTTTGTTGGTAATATTCCAAATACAATATTCAATTCTTCTAAGCTCATTCGTTTCGAATTGAATAACAATGCATTCAATGGAACTCTGCCCAATAATGCTTTTGGAAATTTAAGGTTCCTCGAATCAATTATCATACACAACAACAATTTGACAATAGATGATTCTCATCAATTTTTTACTTCCTTGTCAAATTGTAGATATTTGGAATATATAGATATATCAGGGAGTCATATAGTTTCCAATCTTCCTAAGTCTATCGGAAACATAACTTGCCAATATTTTGAGGCAAGTTCATGCGGAATTGTTGGTAATATTCCCTTAGAAGTTGGAAACATGAGTGAATTGTTATCTTTTTCTCTATATGATAATAATTTAAATGGACCAATACCTGGTACATTCAAAGGGTTACATAAACTTCAGGGATTGAACCTTAACCACAACAGACTACAAGGATCATTTATTGAGGAGCTTTGTGAAACTAAGAGATTGGAAGCGTTGTATCTTGAAAATAATAAGATTTCTGGAGTTTTACCAACATGTTTGGGAAATTTGAGTTATCTTAGAAAGATATACATAGGATCTAACAATTTAAACTCTATGATACCTTCCTCTCTTTGGAGTCTCACAGATATCTTAGAGATAGATTTGTCCTCTAATAGTTTCATTGGTAATATTCCACTTGAGATTGGAAATTTGAGAGCAATTATATCATTAAATCTATCAAGAAACCAAATTTCAAGCAACATTCCTCCAACCATCAATTTCTTAAAAACTTTGCAGAATCTATCCTTAGCACATAACAAAGTCAATGGATCAATTCCCGCATCACTTGGTGACATGGTAAGTTTGATCTCCTTGGACTTATCCCAAACTATGTTAACTGGTGTTATTCCTAAATCCTTGAAAAATCTTACCCAGCTCCAAAACATCAACTTCTCATATAATAGACTACAAGGAGAGATTCCTGATGGTGGAATTTTCAAAAATTTCACGGCTCAATCTTTTATGCATAATGAAGCACTTTGTGGTAATCCTCGCCTACAAGTACCTTTGTGCGATAATCAGGTTAAGAAAAGTTCACCAAAAAAGAAGTTGTTACTCAAATGCATAATTCCCATAGTTGTGTCAACTATTTTGATTGTTGCAAGCATCATAATTTTGAAAAATAAGAAAAAGAAAAAGGTTGAAAATACTCTTGAAAGAGGACAGTCTAAAACACATACTCAGACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAAGGGGATTGTTTCTGTCAAAGGAGATGTGTACAGCTATGGCATTAAGCTAATGGAAATCTTCACAAGAAGAAAGCCAACAGATGATATGTTTGTTGCAGAACTGAGTTTGAAAACATGGATCAGTCAATCATTGCCTAATTCAATTATGGAGGTCCTGGATTCTAATTTAGTCCAACAATATGGGGAACAAATTGATGACATATTGACTTACATGTCATCTATTTTTAGTTTAGCCCTGAATTGTTGCCAAGATTCGCCTGAAGCAAGAATGAATATGGTAGATGTTACTGTGTCGCTAATCAAAATCAAGACTTTGGTTGTTGGCACAAATAGGGCCTAG 1725 0.3409 MSSLKGLGIEQNHLSGIIQTKIGYSLPNLQYLQLYDNNFVGNIPNTIFNSSKLIRFELNNNAFNGTLPNNAFGNLRFLESIIIHNNNLTIDDSHQFFTSLSNCRYLEYIDISGSHIVSNLPKSIGNITCQYFEASSCGIVGNIPLEVGNMSELLSFSLYDNNLNGPIPGTFKGLHKLQGLNLNHNRLQGSFIEELCETKRLEALYLENNKISGVLPTCLGNLSYLRKIYIGSNNLNSMIPSSLWSLTDILEIDLSSNSFIGNIPLEIGNLRAIISLNLSRNQISSNIPPTINFLKTLQNLSLAHNKVNGSIPASLGDMVSLISLDLSQTMLTGVIPKSLKNLTQLQNINFSYNRLQGEIPDGGIFKNFTAQSFMHNEALCGNPRLQVPLCDNQVKKSSPKKKLLLKCIIPIVVSTILIVASIIILKNKKKKKVENTLERGQSKTHTQTLATIGYLAPEYGSKGIVSVKGDVYSYGIKLMEIFTRRKPTDDMFVAELSLKTWISQSLPNSIMEVLDSNLVQQYGEQIDDILTYMSSIFSLALNCCQDSPEARMNMVDVTVSLIKIKTLVVGTNRA 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02196 574 Gene3D Transferase(Phosphotransferase) domain 1 420 566 - -
Trre15g02196 574 SUPERFAMILY Protein kinase-like (PK-like) 442 565 IPR011009 -
Trre15g02196 574 Pfam Leucine rich repeat 200 258 IPR001611 GO:0005515
Trre15g02196 574 Pfam Leucine rich repeat 296 355 IPR001611 GO:0005515
Trre15g02196 574 ProSiteProfiles Protein kinase domain profile. 224 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02196 574 SUPERFAMILY L domain-like 2 189 - -
Trre15g02196 574 SMART LRR_typ_2 222 246 IPR003591 -
Trre15g02196 574 SMART LRR_typ_2 200 221 IPR003591 -
Trre15g02196 574 SMART LRR_typ_2 342 367 IPR003591 -
Trre15g02196 574 SMART LRR_typ_2 174 199 IPR003591 -
Trre15g02196 574 SMART LRR_typ_2 270 294 IPR003591 -
Trre15g02196 574 SMART LRR_typ_2 26 50 IPR003591 -
Trre15g02196 574 SMART LRR_typ_2 318 341 IPR003591 -
Trre15g02196 574 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 99 394 - -
Trre15g02196 574 SUPERFAMILY L domain-like 135 383 - -
Trre15g02196 574 PANTHER OS04G0122200 PROTEIN 444 565 - -
Trre15g02196 574 Pfam Protein tyrosine and serine/threonine kinase 439 558 IPR001245 GO:0004672|GO:0006468
Trre15g02196 574 Gene3D Ribonuclease Inhibitor 1 392 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02196 Trre-Chr15 17913617 17916327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02196 4 574 Receptor kinase-like Gene Family AT3G47570 25.851 6.24e-34 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre15g02196 PK_Tyr_Ser-Thr 9.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02196 - K13420 mtr:25502863 567.77