Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02195 ATGTCATCACTGATAGGTTTGTATCTTGAACTAAATGACCTCTCAAGCATAATTCAATCAAATAGGGGATATAGCCTTCCTAACTTGCAATATCTACACTTGAACCAAAACAATTTTGTTGGTAATATTCCAAATACAATATTCAATTCTTCTAAGCTCATTCAATTACAATTGCATTACAATGCATTCAATGGAACTCTGCCCAATAATGCTTTTGGAAATTTAAGGCTCCTTGAAATGTTTCTGATATATGACAACAATTTTAGAATAGATGATTCTCTTCAATTTTTTACCTCCTTGTCAAATTGTAGATATTTAAAATATCTACATATATCAGGGAATAATAATATACTATCCAGTCTTCCTAAATCAATTGGAAACATATCTTTAGCATATTTTGTGGCAGATTCATGTGGAATTGCTGGTAATATTCCCTTAGAAGTTGGTAACATGAGTAACTTGCAACTTTTATCACTATCCATGAATAATATAAGTGGACCAATACCTGGTACATTCAAAGGGTTACAAAAACTTCAGGGATTGCACCTTAGCAACAATAGACTACAAGGATCATTTATTGAGGAGCTTTGTGAAACTAAGATATTGGAAGAGTTGTATCTTGAAAATAATAAGCTTACTGGAGTTTTACCAACATGTTTGGGGAATATGACCTCTCTTAAAAACTTACACATAGCATCTAATAGTTTGAACTCTAGAGTACCTTCCTCTCTTTGGAGTCTTAAAGATATATTACAAGTAAATTTGTCCTCTAATGCATTCATTGGTAATCTTCCACCTGAGATTGGGAATTTGAGAGCAATTATACTTTTGGATCTATCAAGAAATCAAATTTCAGGAAACATTCCTGCAACGGTCAGTTCCTTAACAACTTTGCAGAATCTCTCCTTAGCTCATAACAAACTGATGGGTTCAATTCCCAAATCACTTGATCAAATGGTAAGCTTGATTTCCTTGGACTTGTCCCAAAATATGCTAACAGGTGTTATTCCAAAATCCTTAGAATCACTTTTGTATCTTCGAAACATCAACTTCTCATATAACAGATTACAAGGAGAGATTCCTGATGGTGGAGTTTTCAAAAACTTCACGGCTCAATCATTTATGCATAATAAAGCACTTTGTGGTAATCCTCGCCTACAAGTACTTTTGTGCGATAATCAAGTTAAGAAAAGTTCAACAGAAAAGAAATTGTTACTCAAATGCATAATTCCCATTGTTGTGTCAACCATTTTGATTGTTGCAAGCATCATAATTTTGATAGTTAAGAAAAGGAAAAAGGTTGTAAATACTCTTGAAAGGGGTTTATCAACTTTAGGAGCTCCAAGGAGAATATCCTATTATGAACTTGTGCAAGCAACTAATGGATTCAATGAGAGTAACTTACTTGGAAAGGGGGGATTTGGCTCTGTGTATGAGGGGAAGCTTCCTGATGGTGAGATGATTGCGGTTAAAGTAATTGATTTGCAATCAGATGTAAAATCGAAAAGCTTTGATATAGAATGCAATGCAATGAAAAATCTTCGACATCGAAATTTGGTTAAGATTATTAGTGGTTGTTCGAATCTCGATTTCAAAGCACTGGTGCTGGAGTTCATGTCAAATGGAAGTGTGGACAAATGGTTATATTCAAATAACTGTTGTTTAAATTTCTTACAAAGGTTAAACATAATGATTGATGTTGCTTCTGCGTTGGAATATCTCCATCATGGCTCTTCGGTTCCAGTGGTTCATTGTGATCTAAAGCCTACCAATGTGTTGTTGGATGAAAACATGGTTGCACATGTTAGTGATTTTGGTATTGCCAAGCTCATGGATGAAGGACAATCTAAAACACATACTCAGACTTTGGCTACTATTGGATACCTTGCACCAGAGCATGGATCTAAGGGGATTGTTTCGGTAAAAGGAGACGTATTCAGCTATGGCATTATGCTTCATATTATGCTTCATATTTGTGATATTTCTTTATTTACTATTCAGAAAAAACCAGCAAATGATATGTTTGTTGCAGAGCTAACCCTTAATTGTTGTGAATATTCATCTGAAGCAAGAATTAATATGGCAGATGTTACTGATCCCCTAGTCAACCTCAATAATTTGGCTCTTAGCAGAAACATGGTCTAG 2145 0.3455 MSSLIGLYLELNDLSSIIQSNRGYSLPNLQYLHLNQNNFVGNIPNTIFNSSKLIQLQLHYNAFNGTLPNNAFGNLRLLEMFLIYDNNFRIDDSLQFFTSLSNCRYLKYLHISGNNNILSSLPKSIGNISLAYFVADSCGIAGNIPLEVGNMSNLQLLSLSMNNISGPIPGTFKGLQKLQGLHLSNNRLQGSFIEELCETKILEELYLENNKLTGVLPTCLGNMTSLKNLHIASNSLNSRVPSSLWSLKDILQVNLSSNAFIGNLPPEIGNLRAIILLDLSRNQISGNIPATVSSLTTLQNLSLAHNKLMGSIPKSLDQMVSLISLDLSQNMLTGVIPKSLESLLYLRNINFSYNRLQGEIPDGGVFKNFTAQSFMHNKALCGNPRLQVLLCDNQVKKSSTEKKLLLKCIIPIVVSTILIVASIIILIVKKRKKVVNTLERGLSTLGAPRRISYYELVQATNGFNESNLLGKGGFGSVYEGKLPDGEMIAVKVIDLQSDVKSKSFDIECNAMKNLRHRNLVKIISGCSNLDFKALVLEFMSNGSVDKWLYSNNCCLNFLQRLNIMIDVASALEYLHHGSSVPVVHCDLKPTNVLLDENMVAHVSDFGIAKLMDEGQSKTHTQTLATIGYLAPEHGSKGIVSVKGDVFSYGIMLHIMLHICDISLFTIQKKPANDMFVAELTLNCCEYSSEARINMADVTDPLVNLNNLALSRNMV 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02195 714 ProSiteProfiles Protein kinase domain profile. 463 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02195 714 SUPERFAMILY L domain-like 136 384 - -
Trre15g02195 714 Pfam Leucine Rich Repeat 321 343 IPR001611 GO:0005515
Trre15g02195 714 Gene3D Ribonuclease Inhibitor 1 392 IPR032675 -
Trre15g02195 714 FunFam Serine-threonine protein kinase plant-type 444 538 - -
Trre15g02195 714 Pfam Protein kinase domain 464 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02195 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Trre15g02195 714 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 99 395 - -
Trre15g02195 714 PANTHER OS04G0122200 PROTEIN 1 682 - -
Trre15g02195 714 SUPERFAMILY L domain-like 2 190 - -
Trre15g02195 714 SMART LRR_typ_2 26 50 IPR003591 -
Trre15g02195 714 SMART LRR_typ_2 223 247 IPR003591 -
Trre15g02195 714 SMART LRR_typ_2 51 74 IPR003591 -
Trre15g02195 714 SMART LRR_typ_2 151 174 IPR003591 -
Trre15g02195 714 SMART LRR_typ_2 202 222 IPR003591 -
Trre15g02195 714 SMART LRR_typ_2 175 200 IPR003591 -
Trre15g02195 714 SMART LRR_typ_2 271 295 IPR003591 -
Trre15g02195 714 SMART LRR_typ_2 319 342 IPR003591 -
Trre15g02195 714 FunFam Os07g0541700 protein 539 627 - -
Trre15g02195 714 Pfam Leucine rich repeat 150 188 IPR001611 GO:0005515
Trre15g02195 714 Pfam Leucine rich repeat 202 259 IPR001611 GO:0005515
Trre15g02195 714 SUPERFAMILY Protein kinase-like (PK-like) 444 700 IPR011009 -
Trre15g02195 714 Gene3D Phosphorylase Kinase; domain 1 446 538 - -
Trre15g02195 714 Gene3D Transferase(Phosphotransferase) domain 1 539 711 - -
Trre15g02195 714 ProSitePatterns Protein kinases ATP-binding region signature. 469 491 IPR017441 GO:0005524
Trre15g02195 714 SMART serkin_6 463 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02195 Trre-Chr15 17906883 17912423 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02195 1 688 Receptor kinase-like Gene Family AT3G47570 38.943 4.98e-144 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre15g02195 Pkinase 2.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02195 - K13420 mtr:25481440 971.844