Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02192 ATGTCTTTACTTGAAGAAATCTATTTAAATGATAACTACTTATCAGGTCCGATTTCGACAGAGATCGGCTATCTTAATAAACTTGAGATTCTAACATTGTCAAATAATACATTTAGTGGATCTTTTCCGTCCAAACTCCTCAACATATCATCACTGACAGTCTTGGAAATTGAACAAAATCACCTCTCAGGCATAATTCAATCAAATATGGAATATAGCCTTCCTAACCTGCAAATTCTACACTTGAACAACAACAATTTTGTTGGTAATATTCCAAATACATTATTCAATTCTTCTAAGCTCATTCAATTTCAATTGGCTAACAACGCATTCAGTGGAACTCTGCCCAATAATGCTTTTGGAAATTTAAGGCTCCTCGAAAAAATTATCATACATAACAACAATTTGACAATAGATGATTCTCTTCAATTTTTTACCTCCTTGTCAAATTGTAGATATTTAATATATCTAGAATTGTCGGGGAATCATATAGTTTCCAGTCTTCCTAAGTCTATCGGAAACATAACTTGCCAATATTTTTCGGCAAGGTCATGTGGAATTGTTGGTAATATTCCCTTAGAAGTTGGAAACATGAGCGAATTGTTATTTTTTTCTCTACATAATAATAAATTAAATGGACCAATACCTAGTACATTCAAAGGGTTACATAAACTTCAGGTATTGTTCCTTAGCTACAATAGACTACAAGGATCATTTATTGAGGAGCTTTGTGAAACTAAGAGATTGGAAGGGTTGTATCTTGATGATAATAAGATTTCTGGAGTTTTACCAACATGTTTGGGAAATATGACTTATCTTAGAGAGATATATATAGGATCTAACAATTTAAACTCTATGATACCTTCCTCTCTTTGGAATCTCACAGATATCTTAGAGATAGATTTGTCCTTTAATAGTTTCATTGGTAATCTTCCACCTGAGATTGGAAATTTGAGAGCAATTATATCATTAGATCTATCAAGAAATCAAATTTCAAGCAACATTCCTCCAACAATCAGTTTCTTAAAAACTTTGCAGAATCTATCCTTAGCACATAACAAACTCAATGGATCAATTCCCGCATCACTTGGTGACATGATAAGTTTGATCTCCTTGGACTTATCCCAAAATATGTTAATTGGTGTTATTCCTAAATCCTTGGAAAATCTTACCCAACTCCAAAACATCAACTTCTCATATAATAGACTACAAGGAGAGATTCCTGATGGTGGAATTTTCAAAAATTTCACGGCTCAATCTTTTATGCATAATGAAGCACTTTGTGGCAATCCTCGCCTACAAGTACCTTTGTGCGATAATAAGGTTACGAAAAGTTCAACAGAAAAGAAGTTGTTACTCAAATGCATAATTCCCATAGTTGTGTCAACTATTTTGATTGTTGCAAGCATCATAATTTTGATAGTTAAGAAAAGGAAAAAGGTTGAAAATACTCTTGAAAGGGGTTTGTCAACTTTAGGACAATCTAAAACACATACAGAGACATTAGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAGTGGAATTGTTTCTGTCAAAGGAGATGTGTACAGCTATGGAATTATGCTAATGGAAATCTTCACAAGAAAAAAACCAGCAGATGATATGTTTGTTGCAGAGCTATGTTTGAAAACATGGATCAGTGGATCATTGCCTAATTCTATTCTTGAGGTCTTGGATTCTAATTTAGTCCAACAATATGGGGAACAAATTGATGACATAGTTACATACATGTCAACTATTTTTGGTTTAGCCCTTAGTTGTTGTGAATATTCACCTGAAGCAAGAATTAATATGGCAGATGTTACTGCTTCCCTAATCAAACTCAAGAATTTGGCTCTTAGCAGAAACATGGTCTAG 1884 0.3355 MSLLEEIYLNDNYLSGPISTEIGYLNKLEILTLSNNTFSGSFPSKLLNISSLTVLEIEQNHLSGIIQSNMEYSLPNLQILHLNNNNFVGNIPNTLFNSSKLIQFQLANNAFSGTLPNNAFGNLRLLEKIIIHNNNLTIDDSLQFFTSLSNCRYLIYLELSGNHIVSSLPKSIGNITCQYFSARSCGIVGNIPLEVGNMSELLFFSLHNNKLNGPIPSTFKGLHKLQVLFLSYNRLQGSFIEELCETKRLEGLYLDDNKISGVLPTCLGNMTYLREIYIGSNNLNSMIPSSLWNLTDILEIDLSFNSFIGNLPPEIGNLRAIISLDLSRNQISSNIPPTISFLKTLQNLSLAHNKLNGSIPASLGDMISLISLDLSQNMLIGVIPKSLENLTQLQNINFSYNRLQGEIPDGGIFKNFTAQSFMHNEALCGNPRLQVPLCDNKVTKSSTEKKLLLKCIIPIVVSTILIVASIIILIVKKRKKVENTLERGLSTLGQSKTHTETLATIGYLAPEYGSSGIVSVKGDVYSYGIMLMEIFTRKKPADDMFVAELCLKTWISGSLPNSILEVLDSNLVQQYGEQIDDIVTYMSTIFGLALSCCEYSPEARINMADVTASLIKLKNLALSRNMV 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02192 627 SUPERFAMILY L domain-like 11 237 - -
Trre15g02192 627 PANTHER OS04G0122200 PROTEIN 492 616 - -
Trre15g02192 627 ProSiteProfiles Protein kinase domain profile. 272 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02192 627 SMART LRR_typ_2 222 247 IPR003591 -
Trre15g02192 627 SMART LRR_typ_2 318 342 IPR003591 -
Trre15g02192 627 SMART LRR_typ_2 270 294 IPR003591 -
Trre15g02192 627 SMART LRR_typ_2 390 415 IPR003591 -
Trre15g02192 627 SMART LRR_typ_2 366 389 IPR003591 -
Trre15g02192 627 SMART LRR_typ_2 74 98 IPR003591 -
Trre15g02192 627 SUPERFAMILY Protein kinase-like (PK-like) 493 618 IPR011009 -
Trre15g02192 627 Gene3D Ribonuclease Inhibitor 1 145 IPR032675 -
Trre15g02192 627 Pfam Leucine rich repeat 344 403 IPR001611 GO:0005515
Trre15g02192 627 Pfam Leucine rich repeat 248 306 IPR001611 GO:0005515
Trre15g02192 627 Pfam Protein tyrosine and serine/threonine kinase 488 612 IPR001245 GO:0004672|GO:0006468
Trre15g02192 627 Gene3D Transferase(Phosphotransferase) domain 1 476 625 - -
Trre15g02192 627 Gene3D Ribonuclease Inhibitor 146 440 IPR032675 -
Trre15g02192 627 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 146 442 - -
Trre15g02192 627 SUPERFAMILY L domain-like 183 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02192 Trre-Chr15 17870051 17875891 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02192 503 618 Receptor kinase-like Gene Family AT3G47570 37.607 1.12e-20 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre15g02192 PK_Tyr_Ser-Thr 3.8e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02192 - K13420 mtr:25502863 625.55