Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02152 ATGGAGATAAATGAATGTGAACCAATTGAAACCGATGAACCCAGAGATATTTTTCTCGGTCAAGTTGTAAATAGCAAAGAAGAAGCTTATGATTTATACCAAGAACATGCCTTCAAAGTTGGTTTTAGTGTAAGAAAGGGGAAGGAATGTTATTATGATAATGAGAAAAAGAATACACGGTTGAAAGAGTTTTATTGTTCCAAACAAGGGTTCAAGAACAATGAACCTGATGGTGAAGTGGCTTATAAAAGAGCAGATTCAAGAACAAATTGTAAAGCTATGATGTTGAAAAAGTGGCGCCGCTTAGAGGTTGAGGAGGAGTTCAAAAACAGCCAAAGTACACCTCCTCTTGTTATAAACATTAGTGAAACACTACGGCATGCATCTACCGTATATACTCACAAAGTCTTCAATCTTTTTCTGAACGAGTATCTTGAAGGGACAGGTGGAAGCACTTCTATAGAGATTGGTCAATCTGATAATGTGTCAAATCATGAAGTCATGCTGAACAATAAGCCTAATAAAAAATATACAGTGACATTTGACTCTTCGGATATGAAGATTAATTGTAGTTGCTGCAAGTTTGATTCTTTGGGCATTCTTTGTAGTCATGCTCTGCGAATTTATAACATCAAAGGTATTTTAAGAATACCTGACCAATACTTCTTAAAAAGATGGTCAAAAAATGCAAGGTCTGTGATTTATGACCACATAACTAGGGCCATGGGAGAAGATTCTACCTCCAATTCGGGGATCAATGATGGAGATGCCGGTATTCTTTATCGCAATGCTATTATGAAGTCATTCTACTATCTAGTTTTGGAAAGTCAAGACAGCAAAGAAGCTCAAAATATTATGTGGAAATTACTTGATATTGGAGTTGAGAGGGTGCGGAAAGGTGTCGGCAAGGGAAATTTAACTTCATATGAAGAAACAACGGAGACAAATTTCAACGAAAATGAGGAATCGTGCTTCACACCGATGGTCTGA 990 0.3687 MEINECEPIETDEPRDIFLGQVVNSKEEAYDLYQEHAFKVGFSVRKGKECYYDNEKKNTRLKEFYCSKQGFKNNEPDGEVAYKRADSRTNCKAMMLKKWRRLEVEEEFKNSQSTPPLVINISETLRHASTVYTHKVFNLFLNEYLEGTGGSTSIEIGQSDNVSNHEVMLNNKPNKKYTVTFDSSDMKINCSCCKFDSLGILCSHALRIYNIKGILRIPDQYFLKRWSKNARSVIYDHITRAMGEDSTSNSGINDGDAGILYRNAIMKSFYYLVLESQDSKEAQNIMWKLLDIGVERVRKGVGKGNLTSYEETTETNFNENEESCFTPMV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02152 329 ProSiteProfiles Zinc finger SWIM-type profile. 177 213 IPR007527 GO:0008270
Trre15g02152 329 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 99 297 IPR031052 GO:0006355
Trre15g02152 329 SMART 26again6 188 215 IPR006564 GO:0008270
Trre15g02152 329 Pfam SWIM zinc finger 177 208 IPR007527 GO:0008270
Trre15g02152 329 Pfam FAR1 DNA-binding domain 32 99 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02152 Trre-Chr15 17454945 17456972 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre15g02152 FAR1 1.5e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02152 - - mtr:112420296 292.737