Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02143 ATGCCGTCTCAAGCGGATCTAGATCGTCAAATCGAGCACCTGATGGCGTGCAAGCCTCTAACGGAATCGGAGGTAAAGGCGCTTTGCGAACAAGCGAGGGCGATTCTGGTAGAGGAGTGGAACGTTCAGCCGGTGAAGTGTCCTGTCACTGTTTGCGGCGATATTCACGGCCAGTTTTACGATCTTCTTGAGTTGTTTCGGATAGGAGGAGATGCTCCTCATACTAATTACCTCTTTATGGGTGATTATGTTGATCGTGGATACTATTCCGTGGAGACTGTTACACTTCTCGTGGCCTTGAAAGTTCGTTACAGAGATAGAATTACAATTCTCAGGGGAAACCATGAAAGTCGTCAAATTACTCAAGTGTATGGCTTCTATGATGAATGCTTGAGAAAATACGGAAATGCCAATGTCTGGAAATTCTTCACCGACCTGTTTGATTATTTACCTCTGACCGCCCTCATTGAGAGTCAGATTTTCTGCTTGCACGGAGGTCTTTCACCGTCTTTGGATACGCTGGATAATATCAGAGCATTGGATCGTATACAAGAGGTTCCACATGAAGGACCAATGTGTGATCTCTTGTGGTCTGATCCCGATGATCGCTGTGGGTGGGGAATATCTCCACGTGGTGCTGGATACACATTTGGGCAGGATATAGCTGCTCAGTTCAATCATACCAATGGTCTCTCCCTGATATCTAGAGCTCACCAACTTGTTATGGAAGGATACAATTGGGCCCAGGAAAAGAATGTGGTCACTGTATTTAGTGCTCCGAATTACTGTTACCGGTGTGGGAATATGGCTGCTATACTGGAAATCGGAGAGAATATGGATCAGAATTTTCTTCAATTTGATCCAGCCCCCAGGCAAATTGAGCCTGACACTACACGCAAGACTCCAGATTATTTTTTGTAA 921 0.4539 MPSQADLDRQIEHLMACKPLTESEVKALCEQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLLELFRIGGDAPHTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWAQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02143 306 SUPERFAMILY Metallo-dependent phosphatases 4 293 IPR029052 -
Trre15g02143 306 ProSitePatterns Serine/threonine specific protein phosphatases signature. 111 116 IPR006186 GO:0016787
Trre15g02143 306 CDD MPP_PP2A_PP4_PP6 6 290 - -
Trre15g02143 306 PRINTS Serine/threonine phosphatase family signature 174 201 IPR006186 GO:0016787
Trre15g02143 306 PRINTS Serine/threonine phosphatase family signature 252 268 IPR006186 GO:0016787
Trre15g02143 306 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Trre15g02143 306 PRINTS Serine/threonine phosphatase family signature 230 250 IPR006186 GO:0016787
Trre15g02143 306 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Trre15g02143 306 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Trre15g02143 306 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Trre15g02143 306 FunFam Serine/threonine-protein phosphatase 1 306 - -
Trre15g02143 306 Pfam Calcineurin-like phosphoesterase 48 239 IPR004843 GO:0016787
Trre15g02143 306 SMART pp2a_7 20 290 IPR006186 GO:0016787
Trre15g02143 306 Gene3D - 2 306 IPR029052 -
Trre15g02143 306 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 5 306 IPR047129 GO:0004722
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02143 Trre-Chr15 17388423 17393139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02143 49 225 Calmodulin-binding Proteins AT5G63870 36.916 1.19e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02143 K04382 - tcc:18609327 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02143 15 17388423 17393139 Trre15g02143 15 17388423 17393139 ECH
Trre9g02448 9 29000534 29003981 Trre15g02143 15 17388423 17393139 PCT