Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02142 ATGGCTAAATCTTATTCATTGGTTCCTTTGGCCTTTTTCTCAATGCTCTTCCTACAAACCCTAGCTCACCTACCCCTTGACTCAAATTGGTATGATGCTAGTGCAACCTTCTACGGTGACATGCAAGGTGGTGAAACTATGCAGGGAGCTTGTGGTTATGGTGATCTTTTCCAACAAGGGTATGGGCTTGAAACCACGGCACTAAGCACCGCATTATTCAACGAAGGCTATAGTTGCGGTGCATGTTTTGAGATCAAGTGTGTCAACGATCCTCAATGGTGTCTAAAAAATGTGAACTCAATTACCGTTACCGCAACAAATTTTTGTCCTCCTAATTATGTTGATGGCAGTTGGTGTAATCCTCCTCAAAAACACTTTGACTTGAGCATGAAAATGTTTACGACTATTGCCATTTACAAAGCAGGTATCATCCCCGTTCAATATCGACGTGTTCCTTGCATCAAAAGTGGTGGTGTTAGGTTTCAGCTTAGTGGAAATCCTTACTTTTTAATGATTTTGGTGTACAATGTTGCCAATGCTGGTGATGTTTCACATATAGTTATCAAAGGATCTAATAGTGATTGGGCTCCAATGACACATAATTGGGGACAAATTTGGCATACAGGAATGAATTTGGTTGGACAAGACTTATCTTTCTGGATAACTACAAGTGAAAGAAAATCTTTGGAGTTTGTCTCTGTTATTCCTTCTAATTGGCAATTTGGACAAACTTATGAAGCCTCTAGAAATTTTTAA 756 0.3942 MAKSYSLVPLAFFSMLFLQTLAHLPLDSNWYDASATFYGDMQGGETMQGACGYGDLFQQGYGLETTALSTALFNEGYSCGACFEIKCVNDPQWCLKNVNSITVTATNFCPPNYVDGSWCNPPQKHFDLSMKMFTTIAIYKAGIIPVQYRRVPCIKSGGVRFQLSGNPYFLMILVYNVANAGDVSHIVIKGSNSDWAPMTHNWGQIWHTGMNLVGQDLSFWITTSERKSLEFVSVIPSNWQFGQTYEASRNF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02142 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Trre15g02142 251 SUPERFAMILY PHL pollen allergen 155 246 IPR036749 -
Trre15g02142 251 SUPERFAMILY Barwin-like endoglucanases 29 176 IPR036908 -
Trre15g02142 251 Pfam Lytic transglycolase 65 148 IPR009009 -
Trre15g02142 251 Gene3D - 158 251 IPR036749 -
Trre15g02142 251 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Trre15g02142 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 158 IPR007112 -
Trre15g02142 251 PANTHER EXPANSIN-A15 18 250 IPR002963 GO:0009664
Trre15g02142 251 SMART dpbb_1 65 148 IPR007112 -
Trre15g02142 251 Gene3D - 22 153 IPR036908 -
Trre15g02142 251 CDD DPBB_EXPA_N 30 153 - -
Trre15g02142 251 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Trre15g02142 251 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Trre15g02142 251 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Trre15g02142 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Trre15g02142 251 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Trre15g02142 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Trre15g02142 251 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Trre15g02142 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Trre15g02142 251 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Trre15g02142 251 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Trre15g02142 251 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Trre15g02142 251 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Trre15g02142 251 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Trre15g02142 251 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Trre15g02142 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02142 Trre-Chr15 17382867 17384018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02142 1 251 Expansin Gene Family AT5G39280 57.414 4.52e-113 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02142 - - gmx:100789595 363.999