Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02130 ATGGCGAGTGAAGGTGGTAAGAAACTAACTGAAAATGACGCCTTAGCATTTCTTAAGGCAGTCAAGGATGTTTTCAAAGATGAAGAGGAAAATTATAATTACTTTTTGGAAATAATGCATGATTACAAAGAAAAAAGAATTTACTACAATGATCTTATGACGAAGGTGAAGGAGTTATTTAAAGGACACAACGATCTAATTATAGGATTTAACATATTTGCACCAAGTGATTATCAAATCCCAGTTTCAAAAGAAGAACCTCCAAATAGGATTGTTGATGAATATCAAATGAAAAATCCATTAGAAGAAGCAAAACCTATTGATGCACAATCTCCTCAGATGATGCTTGGTGGAGATAATCTCATTGTGGCTCCATCAGGAAATGAACCATGTTCAATGAGAAAACTTGGTGGATATGAAGATGCTACAAAGTTTGTGACCAAGATTAAGATTCGGTTTGAAAGAGATGGCCATGTTTACAAGTCATTTCTCAACATCATGAACATGTTGGGAGAGGGAAAAAAATCTTACACCGATACTTATCATGAGGTTGCTGCACTTTTCGAAGGTCATGCAGATCTTCTTGATGAGTTAATTCAGTTTTTTCCTGGCACTTCAAGAGTAGAAGCCTCTACCTAA 639 0.3552 MASEGGKKLTENDALAFLKAVKDVFKDEEENYNYFLEIMHDYKEKRIYYNDLMTKVKELFKGHNDLIIGFNIFAPSDYQIPVSKEEPPNRIVDEYQMKNPLEEAKPIDAQSPQMMLGGDNLIVAPSGNEPCSMRKLGGYEDATKFVTKIKIRFERDGHVYKSFLNIMNMLGEGKKSYTDTYHEVAALFEGHADLLDELIQFFPGTSRVEAST 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02130 212 ProSiteProfiles PAH domain profile. 7 77 IPR003822 GO:0006355
Trre15g02130 212 SUPERFAMILY PAH2 domain 7 75 IPR036600 GO:0006355
Trre15g02130 212 FunFam Paired amphipathic helix protein Sin3 13 75 - -
Trre15g02130 212 Gene3D Paired amphipathic helix 141 203 IPR036600 GO:0006355
Trre15g02130 212 PANTHER SIN3B-RELATED 9 206 IPR039774 GO:0003714
Trre15g02130 212 ProSiteProfiles PAH domain profile. 134 205 IPR003822 GO:0006355
Trre15g02130 212 FunFam Paired amphipathic helix SIN3-like protein 135 205 - -
Trre15g02130 212 Pfam Paired amphipathic helix repeat 158 202 IPR003822 GO:0006355
Trre15g02130 212 Pfam Paired amphipathic helix repeat 30 73 IPR003822 GO:0006355
Trre15g02130 212 SUPERFAMILY PAH2 domain 139 203 IPR036600 GO:0006355
Trre15g02130 212 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02130 Trre-Chr15 17319011 17321436 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02130 9 86 WRKY Transcription Factor Family AT4G12020 43.590 2.07e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre15g02130 PAH 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02130 K11644 - tpra:123896139 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02130 15 17319011 17321436 Trre15g02130 15 17319011 17321436 ECH
Trre9g02372 9 27784454 27796711 Trre15g02130 15 17319011 17321436 PCT