Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g02128 | ATGAAGAGGTCAATAGATGATGTTTATATGAGTTCACAACTCAAACGTCCTGTGCTGTCTTCTAGAGAAGAACCCTCGGGGCAACCCCAAGTGATGTTAGTGACAAATGATGCCTTATCATATCTAAAGGCAGTAAGAGAAATGTTTCAAGATGACAAAGAAAAGTATATTGAATTTTTGGAAGTCATGAAGGATTTCAAGGCCCAAAGAATTGATACGGCTGGTGTCATAGAAAGAGTGAAGGAGCTATTTAAAGGCCATAAAGACTTAATTTTGGAGTTTAACACTTTCTTGCCAAAGGGTTATGTAATCACACTTCAATCGGAAAATGAACCACCTCCACTAAAGAAGCCTGTTGAATTTGAAGAAGCTATTAACACGGATTTGGATTAA | 393 | 0.374 | MKRSIDDVYMSSQLKRPVLSSREEPSGQPQVMLVTNDALSYLKAVREMFQDDKEKYIEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDLILEFNTFLPKGYVITLQSENEPPPLKKPVEFEEAINTDLD | 130 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g02128 | 130 | PANTHER | SIN3B-RELATED | 33 | 126 | IPR039774 | GO:0003714 | |
Trre15g02128 | 130 | Gene3D | Paired amphipathic helix | 37 | 99 | IPR036600 | GO:0006355 | |
Trre15g02128 | 130 | ProSiteProfiles | PAH domain profile. | 31 | 101 | IPR003822 | GO:0006355 | |
Trre15g02128 | 130 | SUPERFAMILY | PAH2 domain | 34 | 100 | IPR036600 | GO:0006355 | |
Trre15g02128 | 130 | Pfam | Paired amphipathic helix repeat | 54 | 98 | IPR003822 | GO:0006355 | |
Trre15g02128 | 130 | FunFam | Paired amphipathic helix protein Sin3 | 37 | 99 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g02128 | Trre-Chr15 | 17301924 | 17303703 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g02128 | 33 | 113 | WRKY Transcription Factor Family | AT4G12020 | 56.790 | 3.15e-23 | 92.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Trre15g02128 | PAH | 3e-18 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g02128 | K11644 | - | csin:114278748 | 200.675 |