Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02128 ATGAAGAGGTCAATAGATGATGTTTATATGAGTTCACAACTCAAACGTCCTGTGCTGTCTTCTAGAGAAGAACCCTCGGGGCAACCCCAAGTGATGTTAGTGACAAATGATGCCTTATCATATCTAAAGGCAGTAAGAGAAATGTTTCAAGATGACAAAGAAAAGTATATTGAATTTTTGGAAGTCATGAAGGATTTCAAGGCCCAAAGAATTGATACGGCTGGTGTCATAGAAAGAGTGAAGGAGCTATTTAAAGGCCATAAAGACTTAATTTTGGAGTTTAACACTTTCTTGCCAAAGGGTTATGTAATCACACTTCAATCGGAAAATGAACCACCTCCACTAAAGAAGCCTGTTGAATTTGAAGAAGCTATTAACACGGATTTGGATTAA 393 0.374 MKRSIDDVYMSSQLKRPVLSSREEPSGQPQVMLVTNDALSYLKAVREMFQDDKEKYIEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDLILEFNTFLPKGYVITLQSENEPPPLKKPVEFEEAINTDLD 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02128 130 PANTHER SIN3B-RELATED 33 126 IPR039774 GO:0003714
Trre15g02128 130 Gene3D Paired amphipathic helix 37 99 IPR036600 GO:0006355
Trre15g02128 130 ProSiteProfiles PAH domain profile. 31 101 IPR003822 GO:0006355
Trre15g02128 130 SUPERFAMILY PAH2 domain 34 100 IPR036600 GO:0006355
Trre15g02128 130 Pfam Paired amphipathic helix repeat 54 98 IPR003822 GO:0006355
Trre15g02128 130 FunFam Paired amphipathic helix protein Sin3 37 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02128 Trre-Chr15 17301924 17303703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02128 33 113 WRKY Transcription Factor Family AT4G12020 56.790 3.15e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre15g02128 PAH 3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02128 K11644 - csin:114278748 200.675