Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02125 ATGAAGAGGTCAAGAGATGATGTTTACATGAGTTCACAACTCAAACGTCCTGTGCTGTATTCTAGAGGAGAACCCTCGGGGCAACCCCAAGTGATGAGTGGTGTTCAGAAGTTAACGACAAATGATGCCTTATCATATCTAAAGGCAGTAAGAGAAATGTTTCAAGATGACAAAGAAAAGTATGATGAATTTTTGGAAGTCATGAAGGATTTCAAGGCCCAAAGAATTGATACGGCTGGTGTCATAGAAAGAGTGAAGGAGCTATTTAAAGGTCATAAAGACTTAATTTTGGGGTTTAACACCTTCTTGCCAAAGGGTTATGCAATCACACTTCCATCGGAAAATGAACCACCTCCACTGAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTAGGCAAGATCAAGACTCGTTTTCAAGGCAATGATCGTGTTTATAAGACTTTTTTAGACATATTAAATATGTATAGAAAGGAAACCAAGACTATCACCGTGGTTTACCAAGAGGTTTCTGCCCTCTTCCAAGACCATGCAGATCTTCTTGAGGAGTTCACTCATTTTCTTCCGGATACTTCAGGAGCAGCCGCTGCTCATTTTGCTTCTGCTCCTGCTCGTAATTCTCTCCGTGATAGGAACTCTGCAATGCCAACAGTGAGGCAAACACATGTCGAAAAGAGAGAAAAGACAATAGCTTTGCATGCTGATCGTGATCTCGGCGTTGATCATTCTGATCCAGAACTTGACAGAGGTGTGATGAGGGCTGATAAGGAACAGAGAAGACGCGAGAGAGAAAAGGACCGTAGAGAAGAAAGAGATAGGAGAGAAAGGGAAAGGGATGATAGAGATTATGATAATGATGGTAATCGGGAGCTTTTGTCCCTCAAGCGAAAATCTGGTCACAGGGCTGTAGATGCTGGTACGGAACCATCGCATGATGCAGATGAAAAGCTTGACATGCACCATATTTCGTCCGCTTCTGAGGATAAAAGTTCTTTGAAAAATATGTGCAGTCCAGTGCTTGCGTTCCTTGAAAAAGTCAAGGAGAAGTTAAGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATCACTCGACAAGAACTGCTGGCATTGGTTGGTGATTTACTGGGAAAATATGCTGATCTTATGGAGGGATTTGATGATTTTGTGACACAATGTGAAAAGAATGAAGGATTCCTTGCCGGTGTCATGAATAAAAGACATGGACCGAAACCTGTGAAGGTAGAGGACAAGGACAGAGATCGGGACAGGGATGACGGGGTGAAAGAAAGGGACCGTGAACTCCGAGAAAGAGACAAATCCACTGGAATTGCCAACAAGGATGTTTCTATTCCTAAGGTGTCTTTAAGCAAAGACAAGTATGTAGGAAAACCTATAAATGAACTGGACCTTTCTAACTGTGAACAATGTACTCCTAGTTACCGTCTTCTACCAAAAAATTACCCAATACCGATAGCTAGCCAAAGAACTGAACTTGGTGACGAAGTATTGAATGATCACTGGGTCTCTGTTACATCAGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGACGAATAAGAGAGTTGAAGAGATCTTAGACAAAGTTAATGCAAATATAATTCAAGGAGACATCCCAATTCGTATTGAGGAGCACTTAACACCACTAAATCTTAGGTGCATTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGATGTGTTGAAAAAGAATGCATCTCTAGCTTTGCCAGTGATATTAACCCGCTTGAAGCAGAAACAGGAGGAGTGGGCAAGATGCCGTGCAGATTTCAATAAAGTTTGGGCTGAAATATATGCGAAGAATTATCACAAATCACTTGATCACCGAAGCTTTTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTAAAGCCTTATTGGGAGAGATCAAAGAAGTTAGTGAGAAGAAAAGAAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCGATTCTTCCTAACTTGAAATTTGAGTATCCTGATCCAGATATTCACGAAGATTTGTATCAACTCATAAAATATTCATGTGGAGAAGTTTGTACAACCGAACAATTGGATAAAGTCATGAGGATTTGGACAACATTTTTAGAACCCATGCTTGGTGTTCCTTCTCGACAGCGCATTGCTGAAGACACAGAAGATGCTGTCAATGCTAAGAATGATTCTGGAAAAACTGGCACTGCAAGTATTGCCAAGGGTGATAGTAGTCCTGGTGTTGGTGTCACCATAATGAATCCCAAGAATTCAAACACTAATAGAAATGGGAATGCTAGTGTTTCATTTCAACAATCAAATTCTTGCAAAGAATGGCAAACTAATGGGGTTGGCGGGGTTAAAGGGGATGGTTGTCTTGAATCAGACCGTTCTGCACCCAAGAATGAAACTTTGGGAAGTAGTACACTGCAAGGTAAAATTCATATAAGTGCATCCGTTCCTGATGAAGTATCAAGAGTCAATAAGCAAGATCATTCCATTGAACAGTTGGTGAATGCTAATGTATCACTGTCCTCTGGAATGGAGCAAAGTAATGGAAGAACAAACATTAATAATGCATCAGGACTTGCTGCAACTCTGTCTAGACCTGGTTATATTTCTAGTGAGGGAGGGCTTGATTTACCTTCATCAGAGGGTGGTGATTCTGCAAGACCAGATACGTCCACAAATGGGGGCGTCACCGAAGACACCAAAGTTCACAGATGTCACAAAGAATCAGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGATTTTGAAGAGGATAACTTTGCAGTTTATGCAAATGCTGGTCTGGAGGCAGTGCATAAAGGAAAAGATTTGAATACCAGTCAACAATACCAAAATAGACATGGAAAACAAATTTGTGGTGAAGCTGGAGGGGTAAATGACGATGAAAGTGATAGAAGTGCTCATAGATCATCGGACGACAGTGAAAATGCATCTGAGAATGGTGATGTTTCTGGTACAGAGTCTGCTGATGGTGAGGAATGTTCTCGAGAAGAACATGAAGAGGATGGGGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGGGGAAGGAATGGCTGATGCCAATGATGTTGAAGGAGACGGAGCCTCATTGCCATATTCAGAGCGCTTTCTTCTCACTGTAAAGCCTCTGGTAAAACATGTTCGTCCAGTGTTGCATGGGAAAGAAAAGAATGTTCAAATTTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCTTCTGCTGAAAGGAAATGGAGAGCTTCAAATGATACAAGTTCTACTGATCAATATGGCAGGTTCATGAATTCTCTTTACAGTTTACTGGATGGTTCTTCTGATAATTCAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAGTCATATGTCTTGTTCACGTTAGACAAGCTGATATATAAACTTGTTAAACAGGTAATGTGCATGAATTCCTTTTTGTAA 3690 0.4046 MKRSRDDVYMSSQLKRPVLYSRGEPSGQPQVMSGVQKLTTNDALSYLKAVREMFQDDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDLILGFNTFLPKGYAITLPSENEPPPLKKPVEFEEAINFVGKIKTRFQGNDRVYKTFLDILNMYRKETKTITVVYQEVSALFQDHADLLEEFTHFLPDTSGAAAAHFASAPARNSLRDRNSAMPTVRQTHVEKREKTIALHADRDLGVDHSDPELDRGVMRADKEQRRREREKDRREERDRRERERDDRDYDNDGNRELLSLKRKSGHRAVDAGTEPSHDADEKLDMHHISSASEDKSSLKNMCSPVLAFLEKVKEKLRNPEDYQEFLKCLHIYSREIITRQELLALVGDLLGKYADLMEGFDDFVTQCEKNEGFLAGVMNKRHGPKPVKVEDKDRDRDRDDGVKERDRELRERDKSTGIANKDVSIPKVSLSKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPIASQRTELGDEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTNKRVEEILDKVNANIIQGDIPIRIEEHLTPLNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLGEIKEVSEKKRKEDDVLLAIAAGNRRPILPNLKFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMRIWTTFLEPMLGVPSRQRIAEDTEDAVNAKNDSGKTGTASIAKGDSSPGVGVTIMNPKNSNTNRNGNASVSFQQSNSCKEWQTNGVGGVKGDGCLESDRSAPKNETLGSSTLQGKIHISASVPDEVSRVNKQDHSIEQLVNANVSLSSGMEQSNGRTNINNASGLAATLSRPGYISSEGGLDLPSSEGGDSARPDTSTNGGVTEDTKVHRCHKESVGHFKSEREEGELSPNGDFEEDNFAVYANAGLEAVHKGKDLNTSQQYQNRHGKQICGEAGGVNDDESDRSAHRSSDDSENASENGDVSGTESADGEECSREEHEEDGDHEHDNKAESEGEGEGMADANDVEGDGASLPYSERFLLTVKPLVKHVRPVLHGKEKNVQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRASNDTSSTDQYGRFMNSLYSLLDGSSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQVMCMNSFL 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02125 1229 MobiDBLite consensus disorder prediction 949 972 - -
Trre15g02125 1229 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Trre15g02125 1229 MobiDBLite consensus disorder prediction 1021 1039 - -
Trre15g02125 1229 MobiDBLite consensus disorder prediction 770 814 - -
Trre15g02125 1229 Coils Coil 255 275 - -
Trre15g02125 1229 PANTHER SIN3B-RELATED 36 1222 IPR039774 GO:0003714
Trre15g02125 1229 SUPERFAMILY PAH2 domain 338 402 IPR036600 GO:0006355
Trre15g02125 1229 SUPERFAMILY PAH2 domain 118 191 IPR036600 GO:0006355
Trre15g02125 1229 SUPERFAMILY PAH2 domain 36 105 IPR036600 GO:0006355
Trre15g02125 1229 Gene3D Paired amphipathic helix 121 193 IPR036600 GO:0006355
Trre15g02125 1229 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Trre15g02125 1229 Coils Coil 555 575 - -
Trre15g02125 1229 Gene3D Paired amphipathic helix 332 404 IPR036600 GO:0006355
Trre15g02125 1229 FunFam Paired amphipathic helix SIN3-like protein 121 192 - -
Trre15g02125 1229 SMART hdac_interact2seq4b 482 582 IPR013194 -
Trre15g02125 1229 MobiDBLite consensus disorder prediction 796 814 - -
Trre15g02125 1229 MobiDBLite consensus disorder prediction 934 948 - -
Trre15g02125 1229 MobiDBLite consensus disorder prediction 413 450 - -
Trre15g02125 1229 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Trre15g02125 1229 MobiDBLite consensus disorder prediction 221 318 - -
Trre15g02125 1229 Pfam Sin3 family co-repressor 484 574 IPR013194 -
Trre15g02125 1229 FunFam Paired amphipathic helix protein SIN3 331 404 - -
Trre15g02125 1229 MobiDBLite consensus disorder prediction 418 450 - -
Trre15g02125 1229 ProSiteProfiles PAH domain profile. 329 402 IPR003822 GO:0006355
Trre15g02125 1229 FunFam Paired amphipathic helix protein Sin3 42 104 - -
Trre15g02125 1229 Pfam C-terminal domain of Sin3a protein 1127 1223 IPR031693 -
Trre15g02125 1229 MobiDBLite consensus disorder prediction 1052 1080 - -
Trre15g02125 1229 MobiDBLite consensus disorder prediction 1013 1092 - -
Trre15g02125 1229 MobiDBLite consensus disorder prediction 920 979 - -
Trre15g02125 1229 MobiDBLite consensus disorder prediction 203 318 - -
Trre15g02125 1229 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Trre15g02125 1229 Pfam Paired amphipathic helix repeat 146 189 IPR003822 GO:0006355
Trre15g02125 1229 Pfam Paired amphipathic helix repeat 355 398 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02125 Trre-Chr15 17287482 17296534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02125 32 118 WRKY Transcription Factor Family AT4G12020 59.770 5.43e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre15g02125 Sin3a_C 8.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02125 K11644 - gmx:100781798 1804.26