Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02120 ATGGCTTTCAATGTGATCCTTTTTTTGTGTCTTGTTTTTCATATATTTTTAATACAAACATGTTATTGCCAAAACAATTCTCCTCAAAACATAGAAACTTTGTATCCAAATGAAACTTTAGCTTCACCACCAACAAATCAACCACCTAAGACACAACCATCATTTTCATCACCACCACCTCAAGGACTAATCGCGGTATCGAAAAGTAGTTCATCAAATGGTAAGATAGCAAAAGCTGTGGCTGCAACTGCAGCAAGTACTATAGTTATTTGTGGTTTAATCTTCATTTTAGCTAAAAGGTGTATAAGGAAAAGAAAGAGATCAAGAGAGATAGTAAATAACATTGTTGTTGATGGAGATAGGCAACAAGTTATTGTGCCTAAAGGGAATGTTTTTGAAAAAATTGATGGAAATGTGAGAGGTTTAATTGTTGATGAAGATGGTTTAGATGTGATTTATTGGAGAAAACTTGAAGAGAAGAATTCAAATAAGGATCTTTATAAAGATATCTTGAATAGTCCAAAAAACAAAGAAGAAATTGAAGATAGTCATGAAGAAGAAGAAAATAAAGTGAAAAAATCTAAGTCCATTCAAGAAATTCCTCTTCTTAGAGGAAAATCTTCATCCTCACACTTGAATTTATATCAAGAAGAGAATGATCTATATAGAGTTCCAAGAATTCAATCTCAATCATCCAAAAACAATGTTGTTCAGAAACAAGATTTTCAATCTCTACCATCCAAAAATGATGTTGTTCATAAACAAGATTTTGAATCTCAATCTCAACCATCCATTCTACCATCAATTTCAGCAGGTGCAGCAGCACCACCTGCACCTCCTCCTCCAATTCCAGCTAGGAAGAGTCAAGCACCACCACCACCTCCTCCGATGAAGACGAGTACTTCGAGTTCATCATCAAAAGCTATCTCTCAAAGCAATCAAAGAAACTCTTCAGGGAAAGGTGTAGAAGAATCCAACAATGATCAAGTGAAATTGAAACCTTTGCATTGGGATAAAGTGAATACTAATGCTGCTGATCATTCCATGGTTTGGGACAAAGTTGATCGCGGCTCATTCAGGGTTGATCAAAATCTTATGGAAGCACTCTTTGGTTATGTCGCGACCAACCGATTGTCGCCTAAACGAAATACTGAATCAACCAGTCAAAGCAATGATCCCTCAACAAAAATTTTCATTCTTGATCCTAGAAAGTCACAAAACATAGCTATTGTTTTGAAATCTCTAGCCGTCTCACGAGACGAAATTCTTGATGCACTCATTGATGGAAAAGGCCTCAATTCAGATACACTTGAAAAGCTTACAAGAGTTTCACCAACAGAAGAAGAGAAATCACTTATCCTTCAATATAAAGAAGATCCATCTAGACTAGCTGCAGCAGAATCATTCCTATATCACATCCTTAAAGCCATTCCTTCCGCGTTTAATCGCTTGAACGCGATGCTATTTAGGTTGAACTATGACTCGGAGGTTATGGAAATCAAAGAGTGTTTGCAGACTATTGAATTTGGATGTAAAGAACTTAGAAGTCAAGGAGTTTTTTTGAAGCTTCTAGAAGCAGTGCTTAAGGCCGGGAATCGAATGAACGATGGAACTTCTCGAGGTAATGCTCAAGCTTTTAACTTAAATTCTCTAAGGAAACTCAATGATGTCAAAAGCAATAATGGAAAAACTACATTACTTCACTTTGTTGTTGAAGAAGTAGTCCTTTCAGAAGGAAAACGCGCGGTTCTTAACCGAAATAACAGCCTAAACCGAAATAACGCGACAAATGTTGTTTCCGAAGAAAGAAGAGAAAGGGAGTACAAAATGTTAGGATTATCAATTGTAGGAGGAATAAGTTCTGAATTTTCCAATGTTAGAAGAGCAGCAAATTTGGATTATAAAAGTTTATTTGGTTCAATTTCAGAACTATCTATTAAGCTTAATCAAATTAAAGAACTTGTGTCACAATGTGAGAATGGTGAAAGTGGAAATTTTGTGAAAGAAATGAATTATTTTATTGGAAATGCTGAGAAAGAATTGAAACTAGTGAGAGAGAAACAAACAATTGTGTTGCAGATTCTTAGTAAAACAACACAATATTATGAATCTTCAAAAGAGAAAGAAGAAAATGATCTTCAACTATTTGGTATAGTTAAGGATTTTTTGAGAATGGTTGATCATGTTTGCATTGAAATTGCTCGTGAAATGCAGAAAAAGAATCCTAAAGGAGTGTCTGGAACAAAAAGTGGCCTAAGTGATTCAATTATTGCTAGAGTTTTGGATCAAAGTTGTACGATTCACTTATTTGAACTTATCTACTGGCACAAGTGCTTGTGA 2340 0.3517 MAFNVILFLCLVFHIFLIQTCYCQNNSPQNIETLYPNETLASPPTNQPPKTQPSFSSPPPQGLIAVSKSSSSNGKIAKAVAATAASTIVICGLIFILAKRCIRKRKRSREIVNNIVVDGDRQQVIVPKGNVFEKIDGNVRGLIVDEDGLDVIYWRKLEEKNSNKDLYKDILNSPKNKEEIEDSHEEEENKVKKSKSIQEIPLLRGKSSSSHLNLYQEENDLYRVPRIQSQSSKNNVVQKQDFQSLPSKNDVVHKQDFESQSQPSILPSISAGAAAPPAPPPPIPARKSQAPPPPPPMKTSTSSSSSKAISQSNQRNSSGKGVEESNNDQVKLKPLHWDKVNTNAADHSMVWDKVDRGSFRVDQNLMEALFGYVATNRLSPKRNTESTSQSNDPSTKIFILDPRKSQNIAIVLKSLAVSRDEILDALIDGKGLNSDTLEKLTRVSPTEEEKSLILQYKEDPSRLAAAESFLYHILKAIPSAFNRLNAMLFRLNYDSEVMEIKECLQTIEFGCKELRSQGVFLKLLEAVLKAGNRMNDGTSRGNAQAFNLNSLRKLNDVKSNNGKTTLLHFVVEEVVLSEGKRAVLNRNNSLNRNNATNVVSEERREREYKMLGLSIVGGISSEFSNVRRAANLDYKSLFGSISELSIKLNQIKELVSQCENGESGNFVKEMNYFIGNAEKELKLVREKQTIVLQILSKTTQYYESSKEKEENDLQLFGIVKDFLRMVDHVCIEIAREMQKKNPKGVSGTKSGLSDSIIARVLDQSCTIHLFELIYWHKCL 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02120 779 PANTHER FORMIN-RELATED 16 737 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre15g02120 779 MobiDBLite consensus disorder prediction 34 60 - -
Trre15g02120 779 MobiDBLite consensus disorder prediction 177 196 - -
Trre15g02120 779 MobiDBLite consensus disorder prediction 273 299 - -
Trre15g02120 779 MobiDBLite consensus disorder prediction 42 56 - -
Trre15g02120 779 SUPERFAMILY Formin homology 2 domain (FH2 domain) 277 739 - -
Trre15g02120 779 Gene3D Formin, FH2 domain 343 745 IPR042201 -
Trre15g02120 779 SMART it6_source 322 741 IPR015425 -
Trre15g02120 779 ProSiteProfiles Formin homology-2 (FH2) domain profile. 322 752 IPR015425 -
Trre15g02120 779 MobiDBLite consensus disorder prediction 230 334 - -
Trre15g02120 779 MobiDBLite consensus disorder prediction 300 325 - -
Trre15g02120 779 Coils Coil 177 197 - -
Trre15g02120 779 MobiDBLite consensus disorder prediction 230 268 - -
Trre15g02120 779 Pfam Formin Homology 2 Domain 325 727 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02120 Trre-Chr15 17249498 17252099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02120 9 740 FH2 protein (formin) Gene Family AT1G70140 42.634 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02120 - - adu:107481275 733.021