Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02109 ATGAATGTTACTCGTTCTGCTTTGATACACCATCTTCAAACTTCACCAATTCGCTTCAACAATGTTCTACGCAATCCCATTTCACCTTCTTCTCTATTCAATTTCAAACCAACGCGTTTCTTTACTCTAACCCTTCCACGCCAAACGCAGTCACAATCAGATGTTGGAACCGCCAATTCATCACAAGGTCGAGATACTTTCTTTGCTCAAGAAACTGTTTCGTGGAGTTCACTTGGTCTTTCTGATACTCTCTCTGTTGCTCTCTCTAAAATTGGACTCAAAACACCTTCTCTTGTTCAGGCTTCTTCTATTCCTTCTGTGTTGTCAGGGAAGGATGTAGTTATTGCTGCAGAGACCGGAAGTGGTAAGACATACAGTTATCTACTCCCTCTCATTGATAAGCTGAGGGATACACAAGAACATTCTCTAGATGTTGTATCTGATAAAGAAGTCTATCCACCGGCCAGGAAAGTTCTGCTGGTGCTTTGTCCAAATGTTCAATTGTGTGAGCAGGTAACTAGTATGGCTAATAGTCTCTGTAGCGACAATGGTGGAACCATTGTTAGTGTGGCATCCATTTGTGGAAGACAGGGATGGCCAATTCGGGAACCTGATATCATTGTGACAACACCTGCTGCTCTTCTTAATCATGTTGACGTTGATAGAACTCGCCGCATGAAATTTATGCATGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTTTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTCCGCTATGATGAAAAAGTCTCGTCTCGATCAAAATCATCAGTAGCAGAGTTGCCAAAAAGTCTGGAGTCTTCTTTGTCGTCAGATGATGCTTTGGAAGGTGAAGAGGAATTTTCAATTGAAGCCATCTCAGACGACGAGGAGGATGATAACACCGAGGATATTGCTAATATTAGTAACGAAGCTGAATCTATCAAGAAAAGAAGGAGTGATTGGAGGAGAGTCAGGAAACATTTTGAGCGTAGTAAACAATATGTTTTTGTTGCAGCTACACTTCCAGTGAATGGAAAGAAAACAGCTGGAGCATTGTTGAAACACATGTTTCCTGATGCTGAGTGGGTTAGTGGAAACTATCTTCATTGTCACAATCCAAGATTGAAGCAAAGATGGATAGAAGTGACCGTTGATACACAGGTGAAAGAACTCGTAAGGGCTGTGAATCACAGTTTAAAATCTGAAGATTTGGATAATGGCAGTGGCATTCATAGAACAATGGTATTTGCTAACACTGTTGAGGCTGCTGAAGCTGTTGTGAAGATATTGAGCTATACTGGGCTTGAATGTTTACGTTATCATAAGAATTGCACATTGGAAGAGCGAGCACAAGCATTAATTGATTTCCGCGAGATAGGTGGTGTCCTTGTATGTACTGATGCAGTTGCTCGTGGTGTGGATATTCCACATGTCTCGCATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGATTGGTCGTACAGCTAGAGCTGGTCAAATCGGACTAGTTACTAACATGTATACCGAGTCCAACAGAGAGCTTGTAGATGCAGTTCGTCGTGCAGAGGAACTTGGTCTACCTATGGAGACCGCATTTAGCAGAAAAAGAAGTTTCCGTAACAAGATCAAAAGGAAAGCGATTGCTGACAAAGTCAAAGAATCTGCAACCATTGAAGAGAGTGTTACAGCATGA 1737 0.4168 MNVTRSALIHHLQTSPIRFNNVLRNPISPSSLFNFKPTRFFTLTLPRQTQSQSDVGTANSSQGRDTFFAQETVSWSSLGLSDTLSVALSKIGLKTPSLVQASSIPSVLSGKDVVIAAETGSGKTYSYLLPLIDKLRDTQEHSLDVVSDKEVYPPARKVLLVLCPNVQLCEQVTSMANSLCSDNGGTIVSVASICGRQGWPIREPDIIVTTPAALLNHVDVDRTRRMKFMHGVKYVVFDEADMLLCGSFQNKVIRLINLLRYDEKVSSRSKSSVAELPKSLESSLSSDDALEGEEEFSIEAISDDEEDDNTEDIANISNEAESIKKRRSDWRRVRKHFERSKQYVFVAATLPVNGKKTAGALLKHMFPDAEWVSGNYLHCHNPRLKQRWIEVTVDTQVKELVRAVNHSLKSEDLDNGSGIHRTMVFANTVEAAEAVVKILSYTGLECLRYHKNCTLEERAQALIDFREIGGVLVCTDAVARGVDIPHVSHVIQADFATSAVDFLHRIGRTARAGQIGLVTNMYTESNRELVDAVRRAEELGLPMETAFSRKRSFRNKIKRKAIADKVKESATIEESVTA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02109 578 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 74 537 - -
Trre15g02109 578 CDD DEADc 87 262 - -
Trre15g02109 578 Pfam Helicase conserved C-terminal domain 419 513 IPR001650 -
Trre15g02109 578 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 73 101 IPR014014 GO:0003724
Trre15g02109 578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 368 IPR014001 -
Trre15g02109 578 Gene3D - 46 366 IPR027417 -
Trre15g02109 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 525 IPR027417 -
Trre15g02109 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 554 IPR001650 -
Trre15g02109 578 CDD SF2_C_DEAD 384 522 - -
Trre15g02109 578 Pfam DEAD/DEAH box helicase 99 262 IPR011545 GO:0003676|GO:0005524
Trre15g02109 578 SMART helicmild6 433 513 IPR001650 -
Trre15g02109 578 Gene3D - 385 578 IPR027417 -
Trre15g02109 578 SMART ultradead3 92 387 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02109 Trre-Chr15 17156640 17162291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02109 321 541 Eukaryotic Initiation Factors Gene Family AT5G11200 28.968 1.55e-12 68.2