Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02105 ATGAATGACGACGAGCCATTACCGGCAATCCTCATGTCGTTGTCTTGCATCTCCGATTGCGACCTCCTCTGCGGCGAGGAAACCTCCGGAGTAGATTCAACGGAATACTCCTCCGACCTCGATTCATCATCGCCGTCGTTGTCATTATTCGCAGAGGAGGAGGATGAGGAGTCCATTGCTGTTTTCATCGAACACGAGCGTAAGTTCGTTACTGGATTCGATTACTTTTCGAGATTTCAATCTCACTCTCTAGTTGCCAACGCCAGAGAAGAATCCATTGCATGGATTCTCAAGGTACAAGCGTACTATGGATTTCAGCCGTTGACTGCGTACCTTTCCGTTAACTATATGGATCGGTTTCTGGACTCTCGACCCTTACCGGAATCAAAGGAATGGCCTCTGCAACTTTTATCTGTTGCATGTTTGTCTTTAGCAGCAAAGATGGAGGAACCCCTGGTTCCTTCTCTCTTGGACCTTCAGATTGAAGGTGCCAAATACATATTTCAACCGAGAACGATTCTTAGAATGGAGCTACTTGTTCTGACTATTTTGGATTGGAGGCTAAGATCAGTCACCCCACTTAACTTCCTTGGTTTCTTTGCGTGCAAGCTAGATCCAACTGGAACTTTCACTCGCTTCCTTATTTCACGTGCTACAGAAATCATCATGTCTAATATCCAAGATGCTGGCTTTCTTGCTTATTGGCCATCATGCATTGCTGCAGCTTCCATACTCTCTGCAGCTAATGAAATTCCTAATTGGTCTTACGTTAAGCCTGAGCATGCTGAATCATGGTGTGAAGGATTAAGAAAAGAAAAAATTATAGGGTGCTATGAGTTGATGCAAGAAATTATGATAAGCAATAACAGAAGAAATCCCCCTAAAGTATTGCCACAGTTGCGAGTGACAACTCGAACTCAAAGGTGGTCCAATGTCTCATCGTCTTCGTCATCATCCCCATCTTCCTCATCATCACCCTCTTTCTCATTGTCTTATAAAAAAAGGAAATTAAATAACTGTTTCTGGTTAGATGTTGACAAAGGAAACTCGGAGTGA 1056 0.4356 MNDDEPLPAILMSLSCISDCDLLCGEETSGVDSTEYSSDLDSSSPSLSLFAEEEDEESIAVFIEHERKFVTGFDYFSRFQSHSLVANAREESIAWILKVQAYYGFQPLTAYLSVNYMDRFLDSRPLPESKEWPLQLLSVACLSLAAKMEEPLVPSLLDLQIEGAKYIFQPRTILRMELLVLTILDWRLRSVTPLNFLGFFACKLDPTGTFTRFLISRATEIIMSNIQDAGFLAYWPSCIAAASILSAANEIPNWSYVKPEHAESWCEGLRKEKIIGCYELMQEIMISNNRRNPPKVLPQLRVTTRTQRWSNVSSSSSSSPSSSSSPSFSLSYKKRKLNNCFWLDVDKGNSE 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02105 351 SUPERFAMILY Cyclin-like 172 290 IPR036915 -
Trre15g02105 351 SUPERFAMILY Cyclin-like 52 188 IPR036915 -
Trre15g02105 351 Gene3D - 62 255 - -
Trre15g02105 351 FunFam D2/4-type cyclin 72 189 - -
Trre15g02105 351 Pfam Cyclin, C-terminal domain 191 297 IPR004367 -
Trre15g02105 351 Gene3D - 72 189 - -
Trre15g02105 351 PANTHER CYCLINS 51 288 IPR039361 -
Trre15g02105 351 SMART Cyclin_C_2 191 320 IPR004367 -
Trre15g02105 351 ProSitePatterns Cyclins signature. 89 120 IPR006671 -
Trre15g02105 351 CDD CYCLIN_AtCycD-like_rpt1 88 186 - -
Trre15g02105 351 Pfam Cyclin, N-terminal domain 59 188 IPR006671 -
Trre15g02105 351 SMART cyclin_7 94 182 IPR013763 -
Trre15g02105 351 MobiDBLite consensus disorder prediction 307 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02105 Trre-Chr15 17115395 17118480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02105 12 350 Core Cell Cycle Gene Families AT1G70210 58.065 6.44e-128 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02105 K18810 - gmx:100778578 473.781