Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02094 ATGGATGCTAAGAGTGGTCTTTTTGCAGGGTCTCTTAACAGCAATGAACTTGTGGTAATTCAAGGACACAGTGAGCCTAAGACAGTGAAGAATTTGGATGGCCAAGTATGCGAGATATGTGGCGATTCTGTAGGGCGTACGGTAGATGGAGATTTATTTGTAGCTTGTGAAGAGTGTGGCTTCCCTGTATGCAGGCCATGCTATGAGTATGAAAGAAGAGAAGGAACTCAAGTTTGCCCTCAGTGTCATACAAGATACAAGCGTATCAAAGGAAGTCCAAGAGTTGAGGGAGATGAAGATGAAGAAGATGTGGATGACATTGAATACGAATTTAAAATGGAAGAGGAAAAGTACAAGCTTAAGCATGAAGAAAATATGAGAAGCAGAGACGACGATGATGATGATTATGATGAGAATACTAAATATGGGGAGTTACACTTATCTTCTCACAGTGGTGCAAAATTAGATAAAAAGGAGAAAACAGATGATTGGAAGTTGCAACAAGGCAATCTGTTGATTGAAACTGATGCAGTTGATCCTGAAAAAGCCATGAAAGATGAAACTAGACAGCCACTTTCCAGGAAAGTGGCAATACCTTCAGGAAAACTCAGTCCTTATAGAATGATGGTTGTGACTAGATTGATCCTTCTAATACTCTTCTTTGAGTATAGAATCTTCCATCCAGTACCTGAAGCAATTGGACTTTGGTTCATATCGGTATCATGTGAAATCTGGCTTGCGTTGTCATGGATGGTTGATCAGATTCCCAAATGGTTTCCCATTGATCGCGAGACATACCTTGATCGTCTTTCAGTCAGGTTTGAACCGGAAAACAAGCCGAACATGCTATCTCCTATTGATATCTTTGTAACAACTGCGGATCCAATCAAGGAACCGCCTCTTGTTACTGCCAATACTATTCTTTCAATTTTGGCACTAGATTATCCTGCGCAAAAAATCTCATGCTACGTTTCTGATGACGGTGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAGTTCGCGCAAAAATGGGTACCTTTTTGTAAACAATTCTCTGTAGAGCCTCGAGCACCAGAGAAGTATTTCTCTGAGAAGATAGATTTTCTGAAAGATAAGATTCAGACCTCATATGTAAAAGAACGCCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGAATCAATGCACTTGTGGCTAAATCCATGAGAGTTCCCTCAGAAGGATGGAGTATGAAAGATGAGACACCATGGCCAGGAAACAATACAAAAGATCATCCAAGTATGATACAAATCCTTCTTGGTCATAATGGAGGAGACAATAAAGATAACGAACTGCCGTCTCTTGTATATATCTCTAGAGAGAAAAGGCCTGCATTTCAGCATCACACAAAAGCCGGCGCAATGAATGCCTTGCTTCGTGTATCGGCTGTGTTGAGTAATGCTCCTTTTGTGCTCAACTTGGATTGTAATCATTATGTCAATAACAGCAAAGTTGTGAGAGAAGCTATGTGCTTTTTTATGGACATTCAACTTGGGAATAGCATTGCCTTTGTTCAGTTTCCTCTAAGATTTGATAGTCTTGATAGAAACGATCGATATGCCAACAAAAACACTATTTTATTTGATATTAACTTGAGATGTTTAGATGGAATTCAAGGTCCTGTTTATATAGGATCAGGTTGTATATTCAGAAGGAAAGCATTAAATGGCTTTGATCCTCCTAAGGCGGCAAAACGCTCTCAAATCGTACAAGTACACTCAAAACAGGATGAAAATGAAGAGGATGCAAACATTATAGAAGCAACAGATGAAGACAAACAGCTATTGCAATCAGATATGAATACTGAAAATAAATTTGGAAAATCTACACTCTTCATGAATTCTTCATTAACAGAAGAAGGTGGTGTAGATCCTTCTTCAACTCAAGAAGCCTTACTTAAAGAAGCGGTTCATGTCATGAGTTGTAGCTACGAAGATAGAACACTTTGGGGATACGAGGTTGGTATGAGCTATGGATCTATAGCAGCAGATACTCTTACAAGTTTAAAGATGCATACTCGCGGTTGGAGATCGGTATACTGCATGCCAGAGAGGGCTGCTTTTCGAGGAACAGCACCGATCAATCTTACAGAAAGACTTAACCAAGTACTTAGATGGGCCGTAGGATCACTTGAAATCCTATTCAGCCGACACTGTCCGTTATGGTATGGTTTTAAGGAAGGAAGACTCAAGGTTCTTCAAAGGATTGCCTATATTAACAGCACTGTTTACCCTTTTAGTGCATTACCTCTCACAGTCTATTGTATCATTCCTGCCATCTGCTTGCTCACTGACAAATTCATCACACCATCGGTAGGAACTTTTGCAAGTCTAGTATTCATTTCTCTATTCATCTCAATCTTTGCTTCTGCCATTCTTGAACTAAGATGGAGTGGAGTTAGTCTTGAGGAATGGTGGAGAAATCAACAATTTTGGGTGATTGGAAGTGTATCAGCACATTTCTTTGCAATTGTACAAAGCCTAATGGGAGGATTCATTGGTAAAATAAATGCTCATTTCAACATTGTATCAAAGGCACCGGACGACGATGGACAGTTTAACGAATTATATACCATTAGATGGACAGTACTATTAATACCTCCAACAACAGTGACAATAATCAACCTTATTGGTATTGTTGCTGGTTTCACAGATGCTATAAATAGTGGTGAACATGAATGGGGAATATTGATTGGGAAACTGTTTTTTGCTTCATGGGTTATTGCTCATCTTTATCCTTTTCTTAAAGGACTAATGGGAAGACAGAATAGAACACCAACACTTATTGTTATTTGGTCTGTTCTTTTGGCTTCTATTTTCTCTTTGGTTTGGGTAAGAATTGACCCTTTTGTGTTGAAAACTAAAGGGCCTGATGTTAAACAATGTGGAATTAGTTGTTGA 2952 0.3913 MDAKSGLFAGSLNSNELVVIQGHSEPKTVKNLDGQVCEICGDSVGRTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEEDVDDIEYEFKMEEEKYKLKHEENMRSRDDDDDDYDENTKYGELHLSSHSGAKLDKKEKTDDWKLQQGNLLIETDAVDPEKAMKDETRQPLSRKVAIPSGKLSPYRMMVVTRLILLILFFEYRIFHPVPEAIGLWFISVSCEIWLALSWMVDQIPKWFPIDRETYLDRLSVRFEPENKPNMLSPIDIFVTTADPIKEPPLVTANTILSILALDYPAQKISCYVSDDGASMLTFEALQETAEFAQKWVPFCKQFSVEPRAPEKYFSEKIDFLKDKIQTSYVKERRTMKREYEEFKVRINALVAKSMRVPSEGWSMKDETPWPGNNTKDHPSMIQILLGHNGGDNKDNELPSLVYISREKRPAFQHHTKAGAMNALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNSIAFVQFPLRFDSLDRNDRYANKNTILFDINLRCLDGIQGPVYIGSGCIFRRKALNGFDPPKAAKRSQIVQVHSKQDENEEDANIIEATDEDKQLLQSDMNTENKFGKSTLFMNSSLTEEGGVDPSSTQEALLKEAVHVMSCSYEDRTLWGYEVGMSYGSIAADTLTSLKMHTRGWRSVYCMPERAAFRGTAPINLTERLNQVLRWAVGSLEILFSRHCPLWYGFKEGRLKVLQRIAYINSTVYPFSALPLTVYCIIPAICLLTDKFITPSVGTFASLVFISLFISIFASAILELRWSGVSLEEWWRNQQFWVIGSVSAHFFAIVQSLMGGFIGKINAHFNIVSKAPDDDGQFNELYTIRWTVLLIPPTTVTIINLIGIVAGFTDAINSGEHEWGILIGKLFFASWVIAHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVLKTKGPDVKQCGISC 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02094 983 MobiDBLite consensus disorder prediction 122 141 - -
Trre15g02094 983 SUPERFAMILY RING/U-box 22 105 - -
Trre15g02094 983 FunFam Cellulose synthase 19 110 - -
Trre15g02094 983 SUPERFAMILY Nucleotide-diphospho-sugar transferases 299 757 IPR029044 -
Trre15g02094 983 CDD mRING-HC-C4C4_CesA 35 85 - -
Trre15g02094 983 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 428 577 IPR029044 -
Trre15g02094 983 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Trre15g02094 983 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 188 950 - -
Trre15g02094 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Trre15g02094 983 Pfam Cellulose synthase 286 977 IPR005150 GO:0016020|GO:0016760|GO:0030244
Trre15g02094 983 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Trre15g02094 983 Coils Coil 384 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02094 Trre-Chr15 17046918 17052436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02094 1 983 Cell Wall Biosynthesis AT5G17420 63.795 0.0 1371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02094 K10999 - gmx:100777270 1608.58