Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02092 ATGGCTAACGAACGTAAAACTGCACAATTGACAATGTTCTATGCTGGAACTGTTGTTGTGGTGGATGGCTTTCCTGCTGACAAATTCGATGAGCTAAAGTCATTTGCCGAAAATCTGACTCAACCTGCAATTGTTCCTAATATGAGCCCTCAATCATCAGCATCCAGTTCCACACAGATTACTCGAGAACCAACAATAATTGATCGCTTTAAAGAACAAACAACAATTGGTTCCAATAGAAGAGGTTCACTTCTTCAATTCTTTCGACGGAGGAATGATAGGTAG 285 0.4035 MANERKTAQLTMFYAGTVVVVDGFPADKFDELKSFAENLTQPAIVPNMSPQSSASSSTQITREPTIIDRFKEQTTIGSNRRGSLLQFFRRRNDR 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02092 94 ProSiteProfiles Tify domain profile. 3 38 IPR010399 -
Trre15g02092 94 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 5 94 IPR040390 -
Trre15g02092 94 SMART tify_2 3 38 IPR010399 -
Trre15g02092 94 Pfam tify domain 6 30 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02092 Trre-Chr15 17038802 17039178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02092 1 94 Tify Gene Family AT1G72450 28.182 1.32e-07 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre15g02092 tify 9.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02092 - K13464 dct:110113635 44.669