Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02088 ATGGATGAATTGGGAAGTAGTAGCTGTGATTGGAGTAGAGAGCAAGATATAGCGTTTGAAAATGCGTTGGCAAATTTTCCCCACGGATGGGAGCGAGTTGTGGCCAATGTAACCGGGAAAAGTTTAAACGAGATTAAGCGTCATTATGTGGATTTGATTGATGATGTTAACCACATTGAATCTGGTTATGTTCCTCTGCCAGTTTATAATGAAATTCGATCTGTCAAAAAGAGAACTGAGACTTCAAGATCTGTTCAAGAACGGCGAAAGGGTATTCCTTGGACAGAAGCTGAACATAGGTTATTTCTTCAAGGCTTGGAGAACCATGGATGGGGTGACTGGCGAAGTATATCAAGGCACTGTGTGGTAACAAGAACACCTACACAAGTAGCAAGCCATGCTCAGAAATATAAAATTCGACAGAATTCAAAGGAGAAGAAGAAAGAAAGAAAGCGATCCAGCATACATGATGTCACCCATGTAAAAAATGATGACATTTTAGCACCTCAAAGACCAATTATCGGTCAAGCAAGCAGTTCTGCAGCAAGTTCTTCTGGACAATCAGACGAACAAGCTCTTTCATCCCCACCTCCTGGAATTTATGCTGCTCCAAGGATCGAGCAACATATTGGAGGATCTCTTGTATCTGCAGTTGGCACTCCAGTGAATCTTACTGCTGCTGGACAATCACCCAAAGAAGCTCCTCCAACCCCACCTGCTGGAATTTACGCTGCTCCTAGGATTGAGCACCCTATTGGAGGACATCTTGTATCTGCAGTTGGCACTCCAATGAATCTTTCTGCTGCTGGACAATCAACCGAACAAGCTCCTCCAGCCCCACCTGCTGAAATTTATGCTGCTCCTTGGATCGAGCACTCTATTGGAGGACCCCCTGTATCTGCAGTTGGCACTCCAGTGAATCTTACTGCTGCTGGACACATGGCTTATGAACTTGGACCGGATTATGAGACAGTTATGCCAGGAGAACCAATGAACTTGGGTCCTATGACATATCCCATGCAATATACATATGCTCATTCATAA 1044 0.4425 MDELGSSSCDWSREQDIAFENALANFPHGWERVVANVTGKSLNEIKRHYVDLIDDVNHIESGYVPLPVYNEIRSVKKRTETSRSVQERRKGIPWTEAEHRLFLQGLENHGWGDWRSISRHCVVTRTPTQVASHAQKYKIRQNSKEKKKERKRSSIHDVTHVKNDDILAPQRPIIGQASSSAASSSGQSDEQALSSPPPGIYAAPRIEQHIGGSLVSAVGTPVNLTAAGQSPKEAPPTPPAGIYAAPRIEHPIGGHLVSAVGTPMNLSAAGQSTEQAPPAPPAEIYAAPWIEHSIGGPPVSAVGTPVNLTAAGHMAYELGPDYETVMPGEPMNLGPMTYPMQYTYAHS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02088 347 CDD SANT 93 138 IPR001005 -
Trre15g02088 347 FunFam Transcription factor SRM1 4 66 - -
Trre15g02088 347 MobiDBLite consensus disorder prediction 226 245 - -
Trre15g02088 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Trre15g02088 347 SUPERFAMILY Homeodomain-like 87 143 IPR009057 -
Trre15g02088 347 SUPERFAMILY Homeodomain-like 10 59 IPR009057 -
Trre15g02088 347 MobiDBLite consensus disorder prediction 173 194 - -
Trre15g02088 347 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Trre15g02088 347 CDD SANT 11 49 IPR001005 -
Trre15g02088 347 Gene3D - 5 66 - -
Trre15g02088 347 SMART sant 90 140 IPR001005 -
Trre15g02088 347 SMART sant 7 55 IPR001005 -
Trre15g02088 347 MobiDBLite consensus disorder prediction 148 164 - -
Trre15g02088 347 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Trre15g02088 347 ProSiteProfiles SANT domain profile. 94 142 IPR017884 -
Trre15g02088 347 PANTHER TRANSCRIPTION FACTOR KUA1 7 263 - -
Trre15g02088 347 FunFam transcription factor MYB1R1 92 143 - -
Trre15g02088 347 MobiDBLite consensus disorder prediction 132 203 - -
Trre15g02088 347 Gene3D - 92 143 - -
Trre15g02088 347 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02088 Trre-Chr15 17016256 17019166 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g02088 Myb_DNA-binding 1.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02088 - - tpra:123890573 520.776