Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02083 ATGAACACTTCAGTTATTTTCATCATAGTAATTTTAGCTATTGTGTTTTTCATTTCTGGTGCCCTCCAACTGTTTGTTAGATTTCTCATAAGAAAAAGGTCATCTTTATCAATTTCTCAATCCAATAACAACAACCCTCAAATGTCTGAACCTGATCCTTACCAAAGACAGTTACAACAACTCTTCAATCTTCATGATTCAGGTTTAGATCAACCTTTCATTGATGCTTTACCAGTTTTCCTTTACAAAGAGATAATAGGTTTGAAAGAACCATTTGATTGTGCTGTTTGTCTTTGTCAATTCATAGAACAAGACATGTTGAGATTGTTGCCTCTTTGTAATCATGCTTTTCACATTGATTGCATTGATACATGGCTTTTGTCTAATTCAACTTGTCCTCTTTGTAGAGGGAGTCTTTATGAACATGGGTTTGGCTTTGAAACTCCTGTTTATGATTTTGAGAGTTTAAGGGAAGAAGAAGAAGAAGAAGATAGGGTTTTTGATAGTGTTGTTGGTGAGGCTAATTCTGTTAACAAACATGCAGAAAATCATATAATGAGTGGCAAAAGGGTTTTTTCTGTTAGGCTTGGAAAATTTAAAAGCTCAAATAATGGAGAAGGGGGTGTGGAAAGAAATGTAGGAGAGAGTAGTACTAGTACAAATATTATTGATGATGTTAGGAGATGTTATTCAATGGGTTCTTACCAATATGTTGTTGCTGATTCAGATTTGGTAGTGGCTTTGTGTCCTAATAGAGGTGAGGGAGGTAGCAATAATGCTAGCATGAGAAAATTGAAAGGTGGGTTTTCTCAAAATGGGAATTGTTCCATTGATGGTGGGGATATTGAAGGGAAGAAAATCAATGTTGCTAGGAAAGGTGAAAGTTTTTCTATTTCAAAGATATGGTTATGGTCAAGGAAGGAAAAGGTATCAAGTTCATCACAATCTCATTTGGTTAATTCTAATGTTACTTCAACTTTGCCATGGATGAATAGAGAGCTCAAGGAAGCAGCATAG 1017 0.352 MNTSVIFIIVILAIVFFISGALQLFVRFLIRKRSSLSISQSNNNNPQMSEPDPYQRQLQQLFNLHDSGLDQPFIDALPVFLYKEIIGLKEPFDCAVCLCQFIEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEHGFGFETPVYDFESLREEEEEEDRVFDSVVGEANSVNKHAENHIMSGKRVFSVRLGKFKSSNNGEGGVERNVGESSTSTNIIDDVRRCYSMGSYQYVVADSDLVVALCPNRGEGGSNNASMRKLKGGFSQNGNCSIDGGDIEGKKINVARKGESFSISKIWLWSRKEKVSSSSQSHLVNSNVTSTLPWMNRELKEAA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02083 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 141 IPR013083 -
Trre15g02083 338 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Trre15g02083 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 302 - -
Trre15g02083 338 SUPERFAMILY RING/U-box 73 142 - -
Trre15g02083 338 SMART ring_2 94 135 IPR001841 -
Trre15g02083 338 FunFam RING-H2 finger protein ATL46 56 141 - -
Trre15g02083 338 CDD RING-H2_EL5-like 93 136 - -
Trre15g02083 338 Pfam Ring finger domain 93 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02083 Trre-Chr15 16957762 16958778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02083 55 314 C3H Transcription Factor Family AT2G18650 42.807 7.90e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02083 - - gmx:100818135 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02083 15 16957762 16958778 Trre15g02083 15 16957762 16958778 ECH
Trre9g02218 9 24232778 24233197 Trre15g02083 15 16957762 16958778 PCT