Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02065 ATGGCTTCATTAATCAAAATCTCAAGGCTCATCTCTCGTTCAATTTCCTCTTCTTCTTCTTCTTCTACATCCTTGTTGTCGAGAGGTGGGAATGGTTATCTTGGTGGATTGCTTTCTAAATATAGCACTGCTGCTGCCTTTGATGAACAAACAATTAAACCATCAGTGCAAGTAGAACACACACAACTCTTAATTGATGGCAAATTTGTAGATGCTGCAGCTGGTAAAACATTTCCAACATTGGATCCGAGGACCGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACTCTGAAGATGTTGATAGAGCTGTTAAAGCTGCACGCAAAGCATTCGATCTAGGGCCGTGGCCTAAATTGCCAGCCTATGAAAGGCAAAAGATATTGTTGCGTGCTGCTGATCTGATTGAAAAGCATAATGACGAAATTGCAGCACTTGAGACTTGGGATAATGGGAAGCCATACGAACAATCTGCTCAAATTGAAATTCCAATGCTGGTTCGCCTATTTCGTTACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCTGCTGATGGACAGTATCATGTGCAAACATTGCACGAACCAATCGGTGTTGCTGGTCAGATCATTCCATGGAACTTCCCTCTTCTCATGTTTGCTTGGAAGGTGGGACCTGCATTAGCATGCGGCAACACTGTTGTTCTGAAAACCGCTGAGCAGACACCATTGTCTGCTTTGTATGTGGCAAAACTATTTCATGAGGCTGGACTTCCTCCTGGTGTGTTGAATATTGTGTCTGGCTTCGGTCCGACTGCCGGTGCTGCTCTTGCTAGTCACATGGATGTAGATAAGCTTGCATTTACTGGCTCAACTGATACCGGAAAAGTTGTTCTTCAACTTGCAGCTAAAAGCAATCTTAAACCTGTAACTTTGGAGCTTGGTGGGAAATCTCCGTTTATTGTTTGTGAAGATGCTGACATAGATGAAGCTGTTGAGCTAGCTCACTTTGCCTTATTCTTCAACCAGGGACAATGTTGTTGTGCTGGCTCTCGAACATTTGTACATGAACGTGTGCATGATGAGTTTGTCGAGAAAGCAAAGGCCCGCGCATTGAAACGTGCTGTTGGTGATCCATTCAAGTCAGGAACAGAGCAAGGTCCTCAGATTGATTCAAAGCAATTTGAGAAAATACTGAAGTATATTAGATCTGGTGTTGAAACTGGTGCTAAACTTGAAACTGGAGGAGAAAGGCTTGGCAGCAAGGGATTCTATATTCAGCCTACTGTCTTCTCAAATGTTCAGGATAGTATGCTGATTGCAAAGGAAGAGATATTTGGTCCAGTTCAATCCATATTTAAATTCAAGGACCTTGATGAGGTAATTCAAAGAGCAAACAATACAAGGTATGGTCTTGCAGCAGGTGTCTTCACAAAGAACATAGACACTGCAAATACTCTGACTAGAGCATTGAAAGTTGGAACAGTTTGGGTAAATTGCTTTGATACATTTGATGCTGCAATACCTTTTGGTGGTTATAAGATGAGTGGACAAGGCAGAGAAAAAGGAGAATACAGTCTTAAGAACTACTTGCAAGTGAAGGCTGTTGTTACTCCCTTGAAGAATCCAGCATGGCTTTGA 1626 0.4268 MASLIKISRLISRSISSSSSSSTSLLSRGGNGYLGGLLSKYSTAAAFDEQTIKPSVQVEHTQLLIDGKFVDAAAGKTFPTLDPRTGEVIAHVAEGHSEDVDRAVKAARKAFDLGPWPKLPAYERQKILLRAADLIEKHNDEIAALETWDNGKPYEQSAQIEIPMLVRLFRYYAGWADKIHGLTVPADGQYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKTAEQTPLSALYVAKLFHEAGLPPGVLNIVSGFGPTAGAALASHMDVDKLAFTGSTDTGKVVLQLAAKSNLKPVTLELGGKSPFIVCEDADIDEAVELAHFALFFNQGQCCCAGSRTFVHERVHDEFVEKAKARALKRAVGDPFKSGTEQGPQIDSKQFEKILKYIRSGVETGAKLETGGERLGSKGFYIQPTVFSNVQDSMLIAKEEIFGPVQSIFKFKDLDEVIQRANNTRYGLAAGVFTKNIDTANTLTRALKVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02065 541 Pfam Aldehyde dehydrogenase family 70 531 IPR015590 GO:0016491
Trre15g02065 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 75 531 IPR016162 GO:0016491
Trre15g02065 541 FunFam Mitochondrial aldehyde dehydrogenase 2 313 502 - -
Trre15g02065 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491
Trre15g02065 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 307 314 IPR029510 GO:0016491
Trre15g02065 541 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 46 531 - -
Trre15g02065 541 CDD ALDH_F2BC 58 533 - -
Trre15g02065 541 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 65 328 - -
Trre15g02065 541 FunFam Aldehyde dehydrogenase, putative 503 529 - -
Trre15g02065 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620
Trre15g02065 541 SUPERFAMILY ALDH-like 55 535 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02065 Trre-Chr15 16770600 16775238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02065 6 541 Aldehyde Dehydrogenase Gene Family AT3G48000 77.799 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02065 K00128 - gmx:100811891 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02065 15 16770600 16775238 Trre15g02065 15 16770600 16775238 ECH