Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02045 ATGGCTACAAAAGATAAAGATATTTCTTCTACACTTGTTCCTTTTGATCCTAAGAAACAATTTGGAAAGGGAGTAAATCTTGACGTGGAAGAAGAAGCTCCGCCGCCTAATTCCAATCCTCCGAAAAGTTCTCCGTCGAAATTGTCACCAACACCACCGTCTAAATCTCCTTCGCCGCCTAAAGCTTCACCGTCACCGCCACCACCAACACATTCCCCACCACCACCTTCTCCTCCACCAAATTCTCCGCCTCCGCCATCATCACCGCCACCTCAGGCACCGTCTCCACCACCACCCTCCCCTCCACCGCAGCAACTATCACCACCACCTTTGCACAATTCTCCATCTCCTTCACGTAAAAATCCATCTCCATCTCCACCGCAGTTTCAATCCCCACCTCCCTTGGGGAAGAAGTCATCTTCACCCTCGAATGATTCACCTTCTTCTTCTTCTACTTCTTCTTCGCCCAAGAAAGATTCACCTTCTTCTTCTTCAGGCTCGAATGATTCACCGCATAAAGCCTTGCATGCAAAATCAAGAGATTCTTCTCCGCCTAGCTCCTCGCCGGCCGAAATAGTTGGTTACACCCTCGCCGGAGTTTTTGTTGTTGTCTTAGTTGCTGTAGCTGTTATTCTCGTGTTTAGGAGGAAGAAAACCAAAGGAGATGTGTATGGTGCACCCTATATACCACCTCATGGTATTAGTTTTCATGTTAAATCAAGTGATGGACATTACTATGTACAGCAACCGAATTCGTTTCAAAATATCTATAGCAATGGGAACGTTGGAGGAAGCGGCATAAATCCTTTAGGAGGAGGTCATTTAGATTCGGCGCAGCCCATAAGTGCTCAAATAGTTTTTAGTTATGAGATGGTAATGGAAATAACCAATGCGTTTTCACGTCAAAATGTGATAGGGGAAGGAGGATTTGGGTGTGTTTACAAGGGTAGGCTGCTGGATGGAAAAGAAGTGGCGGTCAAGACTCTTAAGGCTGGTAGTGGGCAGGGAGATAGGGAATTTAGGGCTGAAGTTGAGATCATTAGCCGTGTTCATCATCGACATTTGGTATCGTTGGTTGGTTATTGCATATCAGAGCAGCAAAGAATGCTTATCTATGAGTTCCTCCCTAATGGAAATCTTCATAATCACTTGCATGGAAGTGGAATGCCGGTGTTGGGGTGGGCCAATAGGCTGAAGATAGCTATTGGTGCTGCAAAGGGCTTGGCATATCTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATTAAATCCGCCAACATACTTTTGGATGATGCTTTTGAGGCACAGGTTGCAGACTTTGGACTTGCAAGGCTAGCTGATGCTGCTAATACACATGTCTCAACTAGGGTTATGGGTACATTTGGGTACATGGCTCCGGAGTATGCAACAAGTGGAAAATTAACAGATAGATCAGATGTTTTCTCATTTGGCGTTGTCCTGCTTGAGCTTGTAACCGGAAGAAAACCTGTTGATGAAACAATGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCATTACTTATCCATGCATTTGAGACACGAGAGTTTGGTGAACTAGTAGATCCAAGACTAGAAAAACACTATGTGGAGAGTGAAATGTTCAGAATGATAGAGGCAGCTGCAGCTTGTGTTCGACACTCAGCTCCTAAACGGCCTCGAATGTCTCAGGTGGTAAGAGCTTTAGACTCCGGAGATGAAATATCGGATTTATCAAATGGGGTGAAATATGGTCATAGCACAGTTTATGATTCTGGCCAATATGACAAAGACATCATGCTATTCAGGATGATGGGCAATGGCAGCTATGGTGATTCTTCTGATTATGATATATACAGTGCAGAATCCAGTCATTCAAGAGAGCATTCGAGATCACGGCATGCATGGATGCATAGTGGTTCGAGTACCGAGTCAGAATCTAGAGCTTTCAATAGCCATAGATGCAGTAGTACTGCTGACTGA 1992 0.4498 MATKDKDISSTLVPFDPKKQFGKGVNLDVEEEAPPPNSNPPKSSPSKLSPTPPSKSPSPPKASPSPPPPTHSPPPPSPPPNSPPPPSSPPPQAPSPPPPSPPPQQLSPPPLHNSPSPSRKNPSPSPPQFQSPPPLGKKSSSPSNDSPSSSSTSSSPKKDSPSSSSGSNDSPHKALHAKSRDSSPPSSSPAEIVGYTLAGVFVVVLVAVAVILVFRRKKTKGDVYGAPYIPPHGISFHVKSSDGHYYVQQPNSFQNIYSNGNVGGSGINPLGGGHLDSAQPISAQIVFSYEMVMEITNAFSRQNVIGEGGFGCVYKGRLLDGKEVAVKTLKAGSGQGDREFRAEVEIISRVHHRHLVSLVGYCISEQQRMLIYEFLPNGNLHNHLHGSGMPVLGWANRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDDAFEAQVADFGLARLADAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDETMPLGDESLVEWARPLLIHAFETREFGELVDPRLEKHYVESEMFRMIEAAAACVRHSAPKRPRMSQVVRALDSGDEISDLSNGVKYGHSTVYDSGQYDKDIMLFRMMGNGSYGDSSDYDIYSAESSHSREHSRSRHAWMHSGSSTESESRAFNSHRCSSTAD 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02045 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Trre15g02045 663 Gene3D Transferase(Phosphotransferase) domain 1 375 588 - -
Trre15g02045 663 MobiDBLite consensus disorder prediction 630 663 - -
Trre15g02045 663 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 201 625 IPR047117 -
Trre15g02045 663 MobiDBLite consensus disorder prediction 134 172 - -
Trre15g02045 663 MobiDBLite consensus disorder prediction 34 133 - -
Trre15g02045 663 FunFam proline-rich receptor-like protein kinase PERK8 375 587 - -
Trre15g02045 663 MobiDBLite consensus disorder prediction 1 189 - -
Trre15g02045 663 MobiDBLite consensus disorder prediction 639 663 - -
Trre15g02045 663 FunFam Proline-rich receptor-like protein kinase PERK8 274 374 - -
Trre15g02045 663 SMART serkin_6 299 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02045 663 PRINTS Proline rich extensin signature 86 103 - -
Trre15g02045 663 PRINTS Proline rich extensin signature 69 85 - -
Trre15g02045 663 PRINTS Proline rich extensin signature 33 45 - -
Trre15g02045 663 PRINTS Proline rich extensin signature 48 69 - -
Trre15g02045 663 CDD STKc_IRAK 305 573 - -
Trre15g02045 663 ProSiteProfiles Protein kinase domain profile. 299 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02045 663 Pfam Protein tyrosine and serine/threonine kinase 302 572 IPR001245 GO:0004672|GO:0006468
Trre15g02045 663 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Trre15g02045 663 SUPERFAMILY Protein kinase-like (PK-like) 280 572 IPR011009 -
Trre15g02045 663 Gene3D Phosphorylase Kinase; domain 1 275 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02045 Trre-Chr15 16565507 16569079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02045 192 627 Trihelix Transcription Factor Family AT1G70460 64.667 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trre15g02045 PK_Tyr_Ser-Thr 4.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02045 - - gmx:100797563 659.062