Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02044 ATGAGTGATATTGGTGTTGTTCAATTGCTTAGACCCTTTGTTGAGACTAAAGCTTGGGATTATGTTGTTGTTTGGAAATATGGAAATGACCCATCTAGGTTTATTGAATGGATGGGTTGTTGCTGTTGTGGTGGAAACATGAATCTCAAAGAGGAAATGGATGAAGAATATCACTTGGCTCCCATTTGTAGGGATACCCTTTTTCATCATTCAGTTAGAACAAAGACTTGTGAGGCTATTGCCAAGCTTCCTTTTGCAATGTCTCTCTATTCTGGTGTCCATGCAGAGGTTGCAATATCCCAACAACCAATATGGCTTATCCATGACCATGAGGACTCAATTGGAACCCAAGTTTTGATCCCTATTATTGGTGGTCTTGTTGAGCTTTTCACTGAAAAGCTGATCCCAAAAGATATAAATATCATGGAGTTCATTTCAACACACTGTTTTGTCTCTATAAACCAAGAAGCCATATCTGCACAGAGCTACACCAACATGAACTTCAACGAGCATTATTACACTTTAAATCCTGGTCTAGCTGGAGAAAACAATAGCAGCTCTAATCCTGGCATTGAAGGACCCTCCAATGAATCTTTTCCTTCAACTGAGAACCTATCATTCGATTCAAACTTTGGTTGCTTGGTTCCAAATGAATATCTGAATCAACCGGTTAAAATGTCTCCTATACAAAAAGTTAAAAGCTTCAGATACAATAAAACTTCAGTGAAATGTCAGAGTAGTTTGAGTTTCAATTGTGGCAATGGGGAAGAAGATAAAGAAAATTTTTCCAGGGTGGAGCCTAAAAAGGAAGTGTATCATGCTAAAAATCTTATCACAGAGAGAAATAGGAGGAAAAGAATCAAAACCGGACTTTTTACTCTAAGATCTCTAGTCCCTAATATAACCAAGATGGATAGAGCATCAATTCTTGGGGATGCGATTGAATATATAAAGGAATTGCAGAGGCAAGAGATAGAACTTCAAGACGAGGTCAAGGCTTTAGAAGGTGAGGACTGTGAGAAGAATAAACTACAATTGAGGGTGCAAAGAGACACAGAACAAGAAGAAGTAACCAGAAGTATACCTCTCACTGAGATTAAGCAAAGTTCTTCTGATTCCACTAGATATACCGAGATGAAGTTGCAAGTAGACGTGAATCATATTGGCAGAACAAGTTTCATGATTAAGTTGTGCTGTGAGCAGAAGCAATGTGGGTTTTCAAGGTTGATGGAAGCTATAGATTCATTTGGACTCAATGTGGTAAATGCAAACATGACCACATTTGATAGAAAAGTCCTAAACATTCTAATAGTTGAGGCAACTGCGGAGGATATTTCCGCAACAAAACTCAGAGAGTATCTGATAAAGCAAACTGGTTGA 1380 0.3826 MSDIGVVQLLRPFVETKAWDYVVVWKYGNDPSRFIEWMGCCCCGGNMNLKEEMDEEYHLAPICRDTLFHHSVRTKTCEAIAKLPFAMSLYSGVHAEVAISQQPIWLIHDHEDSIGTQVLIPIIGGLVELFTEKLIPKDINIMEFISTHCFVSINQEAISAQSYTNMNFNEHYYTLNPGLAGENNSSSNPGIEGPSNESFPSTENLSFDSNFGCLVPNEYLNQPVKMSPIQKVKSFRYNKTSVKCQSSLSFNCGNGEEDKENFSRVEPKKEVYHAKNLITERNRRKRIKTGLFTLRSLVPNITKMDRASILGDAIEYIKELQRQEIELQDEVKALEGEDCEKNKLQLRVQRDTEQEEVTRSIPLTEIKQSSSDSTRYTEMKLQVDVNHIGRTSFMIKLCCEQKQCGFSRLMEAIDSFGLNVVNANMTTFDRKVLNILIVEATAEDISATKLREYLIKQTG 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02044 459 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Trre15g02044 459 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 144 447 - -
Trre15g02044 459 Gene3D - 265 338 IPR036638 GO:0046983
Trre15g02044 459 SMART finulus 277 326 IPR011598 GO:0046983
Trre15g02044 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 336 IPR036638 GO:0046983
Trre15g02044 459 Coils Coil 317 337 - -
Trre15g02044 459 CDD ACT_UUR-ACR-like 406 456 - -
Trre15g02044 459 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 146 IPR025610 -
Trre15g02044 459 Pfam Helix-loop-helix DNA-binding domain 278 321 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02044 Trre-Chr15 16562138 16564825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02044 6 458 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 32.609 3.57e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g02044 bHLH-MYC_N 2.2e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02044 - - psat:127075085 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02044 15 16562138 16564825 Trre15g02044 15 16562138 16564825 ECH