Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02043 ATGCTTTCAAAGAAGGTTACAATGAGTGATATTGGTGTTGTTCAATTGCTTAGACCCTTTGTTGAGACTAAAGCTTGGGATTATGTTGTTGTTTGGAAATATGGAAATGACCCATCTAGGTTTATTGAATGGATGGGTTGTTGCTGTTGTGGTGGAAACATGAATCTCAAAGAGGAAATGGATGAAGAATATCACTTGGCTCCCATTTGTAGGGATACCCTTTTTCATCATTCAGTTAGAACAAAGACTTGTGAGGCTATTGCCAAGCTTCCTTTTGCAATGTCTCTCTATTCTGGTGTCCATGCAGAGGTTGCAATATCCCAACAACCAATATGGCTTATCCATGACCATGAGGACTCAATTGGAACCCAAGTTTTGATCCCTATTATTGGTGGTCTTGTTGAGCTTTTCACTGAAAAGCTGATCCCAAAAGATATAAATATCATGGAGTTCATTTCAACACACTGTTTTGTCTCTATAAACCAAGAAGCCATATCTGCACAGAGCTACACCAACATGAACTTCAACGAGCATTATTACACTTTAAATCCTGGTCTAGCTGGAGAAAACAATAGCAGCTCTAATCCTGGCATTGAAGGACCCTCCAATGAATCTTTTCCTTCAACTGAGAACCTATCATTCGATTCAAACTTTGGTTGCTTGGTTCCAAATGAATATCTGAATCAACCGGTTAAAATGTCTCCTATACAAAAAGTTAAAAGCTTCAGATACAATAAAACTTCAGTGAAATGTCAGAGTAGTTTGAGTTTCAATTGTGGCAATGGGGAAGAAGATAAAGAAAATTTTTCCAGGGTGGAGCCTAAAAAGGAAGTGTATCATGCTAAAAATCTTATCACAGAGAGAAATAGGAGGAAAAGAATCAAAACCGGACTTTTTACTCTAAGATCTCTAGTCCCTAATATAACCAAGATGGATAGAGCATCAATTCTTGGGGATGCGATTGAATATATAAAGGAATTGCAGAGGCAAGAGATAGAACTTCAAGACGAGGTCAAGGCTTTAGAAGGTGAGGACTGTGAGAAGAATAAACTACAATTGAGGGTGCAAAGAGACACAGAACAAGAAGAAGTAACCAGAAGTATACCTCTCACTGAGATTAAGCAAAGTTCTTCTGATTCCACTAGATATACCGAGATGAAGTTGCAAGTAGACGTGAATCATATTGGCAGAACAAGTTTCATGATTAAGTTGTGCTGTGAGCAGAAGCAATGTGGGTTTTCAAGGTTGATGGAAGCTATAGATTCATTTGGACTCAATGTGGTAAATGCAAACATGACCACATTTGATAGAAAAGTCCTAAACATTCTAATAGTTGAGGCAACTGCGGAGGATATTTCCGCAACAAAACTCAGAGAGTATCTGATAAAGCAAACTGGTTGA 1401 0.3819 MLSKKVTMSDIGVVQLLRPFVETKAWDYVVVWKYGNDPSRFIEWMGCCCCGGNMNLKEEMDEEYHLAPICRDTLFHHSVRTKTCEAIAKLPFAMSLYSGVHAEVAISQQPIWLIHDHEDSIGTQVLIPIIGGLVELFTEKLIPKDINIMEFISTHCFVSINQEAISAQSYTNMNFNEHYYTLNPGLAGENNSSSNPGIEGPSNESFPSTENLSFDSNFGCLVPNEYLNQPVKMSPIQKVKSFRYNKTSVKCQSSLSFNCGNGEEDKENFSRVEPKKEVYHAKNLITERNRRKRIKTGLFTLRSLVPNITKMDRASILGDAIEYIKELQRQEIELQDEVKALEGEDCEKNKLQLRVQRDTEQEEVTRSIPLTEIKQSSSDSTRYTEMKLQVDVNHIGRTSFMIKLCCEQKQCGFSRLMEAIDSFGLNVVNANMTTFDRKVLNILIVEATAEDISATKLREYLIKQTG 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02043 466 Coils Coil 324 344 - -
Trre15g02043 466 CDD ACT_UUR-ACR-like 413 463 - -
Trre15g02043 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 280 343 IPR036638 GO:0046983
Trre15g02043 466 Gene3D - 272 345 IPR036638 GO:0046983
Trre15g02043 466 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 15 153 IPR025610 -
Trre15g02043 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 327 IPR011598 GO:0046983
Trre15g02043 466 Pfam Helix-loop-helix DNA-binding domain 285 328 IPR011598 GO:0046983
Trre15g02043 466 SMART finulus 284 333 IPR011598 GO:0046983
Trre15g02043 466 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 152 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02043 Trre-Chr15 16562117 16564825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02043 13 465 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 32.609 3.55e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g02043 bHLH-MYC_N 2.2e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02043 - - psat:127075085 638.647