Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02028 ATGAGTGAAAGAGAAAAGTTTGAGCTAGAAAGTAAGGAGGGTCCTTTGGATTGGAGGTTTGTGAATGCCACAAACCTTCCAAATTCATCTGTGGATTTGGTTTCAATGGAAAATTCTATGAACTTGAGTAGAGGGGATTTGATGATGGGTTCTTCTTCATGTTCTAATTCAATGGTGGATTCATATAGTCCTAACTTTATGGACCTTCTTACTAATTCTGAAAACTTGGCTGGTTTTTGTGATGTTATTGGGCAGAGTAATGTAAGAGTTGGGTGTGATGATAGAACATTAGGAATGAGTTGGAACCTTGCTAGTTCTATGATGAAGAGGGATAGTATTTTGCCAACTGGAACTGGGATGTTTCCTCAAAGTTTGTCTCAGTTTCCAACTGATTCTCGATTTATTGATGCTGCAAGAATGTCGTGCTTTAGTGCTGGGGGTTTTGGTGATATGTTGAATTCATGTGGGATTCCTCAATCTATGGCTCTACATATGTCTCGGTCCGTTGAGCATCTTGGTAGTGATGGAAGTCCACATCAAAATGATAGAAAAAGTGATTGTCCTGTATTGTCGCCGGATGAAGGGAAACAAGCTCTTGGAGGGTGTTCTAATGAGGCTTATAAAGCTGAATCAAGTGGTGATGATGGTATTGGTAATGGTAGCCATGATGATTCCCAAATGTTGGATTCTACAAGTGGGGAACCTTCTATTAAAGGTCTAAATTCAAAGAAAAGGAAAAGAAGTAGGCAGGATGGTGATAGTGATAAAGCCGCCAAAACTCTTGAGCTTCCAAGGGAAACTGCAAAAGACAACTGTGAGAATAGAAAAAAGGGAAAGCAGCTAACAACTTCAACAGCCAAGGCTTCTGGGAAGAATGCCAAACAGGGGTCTCAAGCTTCTGATCCCCCTAATGAGGGATACGTACATGTCAGGGCTCGCCGTGGTCAAGCAACAAATAGCCATAGTCTTGCAGAGAGAGTGCGGAGAGAAAAGATCAGTGAAAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAACAAGGTCACTGGCAAGGCGGTGATGCTAGACGAAATCATTAACTATGTACAGTCTCTTCAACAACAAGTTGAGTTTTTATCGATGAAACTTGCAACAGTTAATCCACATGTGGATTTTAATATGGAACGGCTGCTTCATAAAGATATTCTTCAACATCGGCCGGATCCATCATCTACTTTGGGGTTTCTCACAGAAATGCCAATGACTTTTCCTCCATTATTACATCCATCTCAACCGGGACTAATTCGTCCGATTCTACCTAACATGGCAAATTCATCACATTTACTCGGTCATACCGTTCAACCACAGTCATTGCCTTTGACCGGAGAATTCAAAGAGCCAAATCAGGTTAATCCATTGCAAGCAGCCAAGCCATGA 1419 0.4137 MSEREKFELESKEGPLDWRFVNATNLPNSSVDLVSMENSMNLSRGDLMMGSSSCSNSMVDSYSPNFMDLLTNSENLAGFCDVIGQSNVRVGCDDRTLGMSWNLASSMMKRDSILPTGTGMFPQSLSQFPTDSRFIDAARMSCFSAGGFGDMLNSCGIPQSMALHMSRSVEHLGSDGSPHQNDRKSDCPVLSPDEGKQALGGCSNEAYKAESSGDDGIGNGSHDDSQMLDSTSGEPSIKGLNSKKRKRSRQDGDSDKAAKTLELPRETAKDNCENRKKGKQLTTSTAKASGKNAKQGSQASDPPNEGYVHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPHVDFNMERLLHKDILQHRPDPSSTLGFLTEMPMTFPPLLHPSQPGLIRPILPNMANSSHLLGHTVQPQSLPLTGEFKEPNQVNPLQAAKP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02028 472 CDD bHLH_AtBPE_like 306 391 - -
Trre15g02028 472 MobiDBLite consensus disorder prediction 246 277 - -
Trre15g02028 472 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 203 416 IPR024097 GO:0006355
Trre15g02028 472 MobiDBLite consensus disorder prediction 278 302 - -
Trre15g02028 472 MobiDBLite consensus disorder prediction 223 238 - -
Trre15g02028 472 Gene3D - 313 386 IPR036638 GO:0046983
Trre15g02028 472 Pfam Helix-loop-helix DNA-binding domain 319 367 IPR011598 GO:0046983
Trre15g02028 472 SMART finulus 322 372 IPR011598 GO:0046983
Trre15g02028 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 385 IPR036638 GO:0046983
Trre15g02028 472 MobiDBLite consensus disorder prediction 176 190 - -
Trre15g02028 472 FunFam Basic helix-loop-helix transcription factor 313 385 - -
Trre15g02028 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 366 IPR011598 GO:0046983
Trre15g02028 472 MobiDBLite consensus disorder prediction 170 306 - -
Trre15g02028 472 MobiDBLite consensus disorder prediction 452 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02028 Trre-Chr15 16401630 16413506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02028 1 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 42.558 3.43e-90 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g02028 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02028 - - tpra:123921399 848.966