Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02008 ATGAATTTAGGATTTTGGAAGAGAGCTTTGGAGTCAAAAAAAGATTCAAATTATACCTTTGATCTTTCTCTCTCTAATCCAAGGGTTTCTTCTTCTTCTTCTTCTACTAATACTTCAAATTCAAACCTCAACAATCTCATAACTCACTCTTATCAAAACACTAATAATTCCATCAACAACCCTTTTCAACCATTTCAATATCAAACCCTAAGTGAAGAGCTAGGTTTTCTCAAACCTATAAGAGGAATTCCAGTTTATAATCATCAAAACCCTCATCATATTCCTATTGGATTATTTTCTCAACCTTGTGTTTCAACTTCAACAACAACTTTTCATTCTCAAGTACCATTGATTAGATCAAAGTTGTTGCCGCGGTTTCCTTCGAAGCGTAGCGTGAGAGCTCCGAGGATGCGTTGGACTACCACGCTTCATAATCGATTTGTTCATGCTGTTGAGCTTTTGGGTGGCCATGAAAGAGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTAAAGGATCTAACGTTATCACATGTTAAGTCTCATTTGCAGATGTACCGGACGGTGAAAATTACAGATAGAGCAGCAGTATCAACAGGAATAGGACAATCTGATATGTATGAAAATGGTTCATCTGGAGACACTTCTGAAGACTTCATGTTTGACATAAACTCTTCAACAAGATCTAATGATCTACCCATTAAATTGGATAAAGAAATTACTAATCAAGATGAAGAAAATTGTGGCATTTGGAGAAACTCTTCAAGGGAAGCTTGGTTGCATGGTAACCCAAAGGTCCATCCTCTTGAAAATGTGTCTTCTCTTGAGGGAATGGATCCAAAGTATCTAAGCAACGAAAGAACTTCATCAGATGGAAGCTCTTCATCAAACATTTCAGGAACACACCTCAAGAAACCAAATTTAGATTTAGAATTCACCTTGGGCACATCACTTTGA 957 0.371 MNLGFWKRALESKKDSNYTFDLSLSNPRVSSSSSSTNTSNSNLNNLITHSYQNTNNSINNPFQPFQYQTLSEELGFLKPIRGIPVYNHQNPHHIPIGLFSQPCVSTSTTTFHSQVPLIRSKLLPRFPSKRSVRAPRMRWTTTLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLSHVKSHLQMYRTVKITDRAAVSTGIGQSDMYENGSSGDTSEDFMFDINSSTRSNDLPIKLDKEITNQDEENCGIWRNSSREAWLHGNPKVHPLENVSSLEGMDPKYLSNERTSSDGSSSSNISGTHLKKPNLDLEFTLGTSL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02008 318 FunFam Myb family transcription factor 133 191 - -
Trre15g02008 318 NCBIfam myb-like DNA-binding domain, SHAQKYF class 135 188 IPR006447 GO:0003677
Trre15g02008 318 Pfam Myb-like DNA-binding domain 136 187 IPR001005 -
Trre15g02008 318 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 28 316 IPR044847 GO:0000976|GO:0006355|GO:0010158
Trre15g02008 318 Gene3D - 134 191 - -
Trre15g02008 318 MobiDBLite consensus disorder prediction 261 302 - -
Trre15g02008 318 SUPERFAMILY Homeodomain-like 132 188 IPR009057 -
Trre15g02008 318 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02008 Trre-Chr15 16257047 16263979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02008 28 316 G2-like Transcription Factor Family AT4G17695 39.873 4.36e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre15g02008 Myb_DNA-binding 3.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02008 - - aprc:113868756 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02008 15 16257047 16263979 Trre15g02008 15 16257047 16263979 ECH
Trre9g01819 9 17225416 17230901 Trre15g02008 15 16257047 16263979 PCT