Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02007 ATGGAGCTATTCCCAGCACAACCAGATTTGTCATTGCAAATCAGTCTTCCAAATTCAGATGATCAAGAAAATATGAATTTAGGATTTTGGAAGAGAGCTTTGGAGTCAAAAAAAGATTCAAATTATACCTTTGATCTTTCTCTCTCTAATCCAAGGGTTTCTTCTTCTTCTTCTTCTACTAATACTTCAAATTCAAACCTCAACAATCTCATAACTCACTCTTATCAAAACACTAATAATTCCATCAACAACCCTTTTCAACCATTTCAATATCAAACCCTAAGTGAAGAGCTAGGTTTTCTCAAACCTATAAGAGGAATTCCAGTTTATAATCATCAAAACCCTCATCATATTCCTATTGGATTATTTTCTCAACCTTGTGTTTCAACTTCAACAACAACTTTTCATTCTCAAGTACCATTGATTAGATCAAAGTTGTTGCCGCGGTTTCCTTCGAAGCGTAGCGTGAGAGCTCCGAGGATGCGTTGGACTACCACGCTTCATAATCGATTTGTTCATGCTGTTGAGCTTTTGGGTGGCCATGAAAGAGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTAAAGGATCTAACGTTATCACATGTTAAGTCTCATTTGCAGATGTACCGGACGGTGAAAATTACAGATAGAGCAGCAGTATCAACAGGAATAGGACAATCTGATATGTATGAAAATGGTTCATCTGGAGACACTTCTGAAGACTTCATGTTTGACATAAACTCTTCAACAAGATCTAATGATCTACCCATTAAATTGGATAAAGAAATTACTAATCAAGATGAAGAAAATTGTGGCATTTGGAGAAACTCTTCAAGGGAAGCTTGGTTGCATGGTAACCCAAAGGTCCATCCTCTTGAAAATGTGTCTTCTCTTGAGGGAATGGATCCAAAGTATCTAAGCAACGAAAGAACTTCATCAGATGGAAGCTCTTCATCAAACATTTCAGGAACACACCTCAAGAAACCAAATTTAGATTTAGAATTCACCTTGGGCACATCACTTTGA 1029 0.3712 MELFPAQPDLSLQISLPNSDDQENMNLGFWKRALESKKDSNYTFDLSLSNPRVSSSSSSTNTSNSNLNNLITHSYQNTNNSINNPFQPFQYQTLSEELGFLKPIRGIPVYNHQNPHHIPIGLFSQPCVSTSTTTFHSQVPLIRSKLLPRFPSKRSVRAPRMRWTTTLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLSHVKSHLQMYRTVKITDRAAVSTGIGQSDMYENGSSGDTSEDFMFDINSSTRSNDLPIKLDKEITNQDEENCGIWRNSSREAWLHGNPKVHPLENVSSLEGMDPKYLSNERTSSDGSSSSNISGTHLKKPNLDLEFTLGTSL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02007 342 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 340 IPR044847 GO:0000976|GO:0006355|GO:0010158
Trre15g02007 342 MobiDBLite consensus disorder prediction 307 326 - -
Trre15g02007 342 Pfam Myb-like DNA-binding domain 160 211 IPR001005 -
Trre15g02007 342 NCBIfam myb-like DNA-binding domain, SHAQKYF class 159 212 IPR006447 GO:0003677
Trre15g02007 342 SUPERFAMILY Homeodomain-like 156 212 IPR009057 -
Trre15g02007 342 FunFam Myb family transcription factor 157 215 - -
Trre15g02007 342 Gene3D - 158 215 - -
Trre15g02007 342 MobiDBLite consensus disorder prediction 285 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02007 Trre-Chr15 16256975 16263979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02007 1 340 G2-like Transcription Factor Family AT4G17695 38.147 1.21e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre15g02007 Myb_DNA-binding 4.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02007 - - aprc:113868756 375.941