Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02004 ATGAGCTTCCAGGACATCGAAGCTGGTCGGCCGTTCGGTTCTAGACGTGGACCGATCAACGGGAAACAAGACCCAACGCAAGCGGTTGCCGCCGGAATTTTTCAGATCAACACCGCCGTTTCGACATTTCAGAGACTCGTCAATACCCTTGGAACCCCCAAAGATACACCTGAGCTCCGTGAAAAGCTTCACAAGACAAGGCAACATATTGGGCAGTTGGTGAAGGATACATCAGCCAAGCTTAAACAAGCTAGTGACATTGATCACCATGCCGATGTTAATGCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTATTGAAAGAGTTTCAGAAGGCGCAACGTCTTTCAGCCGAGAGAGAAACAGCTTATACTCCTTTTGTTCCACAGGCAGTTCTTCCTTCAAGCTATACAGCTAGTGAAATGAACGTCGGTTCTGATAAGACACCAGAACAGCGTGCCCTTCTTGTGGAATCCAGGAGGCAGGAGGTTTTGTTCTTAGATAATGAGATTGCCTTTAATGAGGCAATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAATGAAATTTTCAAGGATCTCGCTGTGCTTGTCCATGAGCAAGGAACCATGATTGATGATATTGGTTCCAACATTGAGAACTCCCATGCAGCAACCGCACAAGCAAGATCTCAACTTGCAAAAGCTTCAAAAACACAAAGATCAAATTCTTCTTTGGCATGCTTGCTTTTGGTGATATTCGGGATTGTGCTTCTCATTTTGATAATAGTTCTTGCTGCTTAG 822 0.444 MSFQDIEAGRPFGSRRGPINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRQHIGQLVKDTSAKLKQASDIDHHADVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQAVLPSSYTASEMNVGSDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQARSQLAKASKTQRSNSSLACLLLVIFGIVLLILIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02004 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Trre15g02004 273 CDD SynN 23 148 IPR006011 GO:0016020
Trre15g02004 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre15g02004 273 CDD SNARE_Qa 200 241 - -
Trre15g02004 273 SMART tSNARE_6 175 242 IPR000727 -
Trre15g02004 273 PANTHER SYNTAXIN 26 264 IPR045242 -
Trre15g02004 273 FunFam Syntaxin-22 like 20 133 - -
Trre15g02004 273 MobiDBLite consensus disorder prediction 1 24 - -
Trre15g02004 273 SMART SynN_4 14 127 IPR006011 GO:0016020
Trre15g02004 273 Pfam SNARE domain 216 268 IPR000727 -
Trre15g02004 273 FunFam Syntaxin-22 like 173 273 - -
Trre15g02004 273 Gene3D - 20 133 - -
Trre15g02004 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Trre15g02004 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
Trre15g02004 273 Gene3D - 174 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02004 Trre-Chr15 16233833 16237639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02004 1 261 SNARE and Associated Proteins AT5G46860 77.011 1.22e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02004 - - gmx:547656 429.869