Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01996 ATGTCAAGACGAGGTTCAAGGGGGAAAAAGGTTTCATTGCTCAAGCTTTTCTCATTTGCTGACTTCTATGATTATGTCTTGATGGCCGTTGGATCTGTTGGTGCATGCATTCATGGTGCATCGGTGCCTGTTTTCTTTATCTTCTTTGGAAAAATTATTAATGCCATAGGTTTGGCTTATCTTTATCCTAAAGAAGCTTCTCACCAAGTTGCCAAGTATGCGTTGGATTTTCTGTATCTAAGTATAGTAATATTGTTCTCATCATGGGCAGAGGTAGCTTGTTGGATGCATACTGGGGAACGTCAAGTAGCAAAGATGAGAATGGCATATTTAAAGGCAATGTTGAATCAAGATATAAGTCTTTTTGATACTGATTCATCAACTGGAGATGTTATTTCTTCTATTACAAGTGACATCATAGTTGTTCAAGAAGCATTATCAGAGAAGGTTGGGAACTTTATGCACTACATAAGCCGATTTATAGCAGGATTTATCATCGGCTTTTTCAGAGTTTGGCAGATCAGTATAGTAACACTTGCTATTGTTCCTTTGATTGGTATTGCTGGAGGTCTTTATGCATATGTGACATTCGGGCTTATTGCAAAAGTTCGTAAATCATATCTAAGGGCAGGTGAAATCGCCCAGGAGGTGATAGGAAATGTCCGAACCGTACAAGCATTTGGAGGAGAACAAAGAGCGGTGATATCATACAAAGTCGCTTTAAGGAACACATATAAGAATGGGCGAAAAGCGGGTTTAGCAAAGGGTCTAGGACTAGGCTCTATGCATTGTGTCCTTTTTCTATCATGGGCTCTTCTTGTGTGGTTTACAAGTATTATTGTTCACAAGGGCATCGCCAATGGTGGAGTCGCTTTCACTACCATGCTCAATGTCGTTATCTCTGGCCTGTCACTTGGGCAGGCAACACCAGACATTGCCGCATTTATTAGAGCAAAGACAGCAGCTTATCCCATTTTCGAGATGATAGAGAGAGACATAGTTAGCAAAAAAACCTCAAAAGCTTGTCGAAAATTAAAAAAAATAGATGGTCACATACAATTTATTAATGTCTGTTTCACTTACCCGTCTCGTCCTGATGTTGTTATTTTCAACAATCTTTATCTTGAGATTCCTTCAGGTAAAGTTTTGGCACTTGTAGGAGGGAGTGGTTCAGGAAAAAGTACAATTATATCATTAATCGAGCGTTTCTATGAACCAATTTCTGGTCAAATTCTGTTAGATAAGAATGATATAAAAGAACTTGATCTTAAATGGCTTAGACAACAAATTGGACTAGTTAATCAAGAGCCTGCACTTTTCGCTACAAGCATAAGGGAGAATATATTGTATGGTAAAAATGATGCCACTCCTGAAGAACTAAACCGTGCTTTGGAACTTTCTAATGCTCACTCTTTCATCAACAATCTTCCTGATGGATTAGATACTCAGGTTGGTGAGAGAGGAATACAATTATCAGGGGGACAAAAGCAGAGAATTGCAATATCTCGTGCTATAGTTAAAAATCCATCAATCCTTTTATTAGATGAAGCAACTAGTGCTCTAGACGCGGAGTCTGAGAAAAGCGTACAAGAAGCTCTTGATCGTGTCATGATTGGTAGAACAACTGTGATAGTGGCACACAGACTTTCAACCATTAGGAATGCAGATATCATAGCTGTTGTTGAACGAGGGAGCATCGTGGAAACTGGAAATCATGAAGAGCTCATTTCCAACTCAAATAGTGTATATGTATCTCTTGTTCAAGGCCACCCTTCTCCGGATCCTTGCTTGGGACAGTCATCAAGCATAAAGAACTTGGTAGAAACATCCCATACATCAACTATTGGTAGCAGTTTTCGTTCGGATAAAGACTCTACTGGTGCGTGTGCTGATGAAGCAGGAAGTGTTGAAAAGCCGAGACATGTTTCATTAATAAGATTATATTCAATGATTGGTCCTTATTGGTCTTATGGAGTTTTTGGAACCTTAGCTGCTTTTACTACTGGTGCTCTTATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTTGTATCATATTATATGGATTGGGATAGTACACAACATGAAGTGAAAAAAATTGCTTTCCTCTTCTGTGGAGCAGCAATTGTAGCTATCACTGCCTATACCATCGAACATCTTTCTTTCGGAATCATGGGCGAACGACTTACCCTTCGTGTCAGGGAAATTATGATTACTGCTATTTTGAAGAACGAAATCGGTTGGTTTGATGATACGAGAAACTCAAGTACTATGCTTTCATCGCGTTTAGAGACTGATGCAACTTTGTTAAAAACAATAGTGGTGGACCGTTCTACAATTCTTTTGCAGAATGTTGGCCTAGTTGTTACTTCATTTATTATTGCATTCATTTTGAACTGGAGGATAACACTTGTTGTCTTGGCAACATATCCTTTGATAATTAGTGGTCACATTGGTGAGAAACTTTTCATGCAAGGATTTGGTGGCAACCTAAGCAAAGCATATCTAAAAGCAAACATGTTAGCTGGGGAGGCTGTTAGTAATATAAGGACTGTGGCTGCATTTTGTGCAGAAGAAAAGATTATTGGTCTTTATGCTGATGAACTTGTTGAGCCTTCCAAACGTTCATTCAAACGAGGCCAAATTGCTGGCATATTTTATGGCATTTCCCAGTTCTTCATTTTCTCATCTTATGGCATAGCCTTGTGGTATGGATCTTTGTTGGTTGAGAAGGATCTTTCTACCTTTAAATCAATCATGAAGTCATTTATGGTTTTAATAGTAACAGCATTGGCTATGGGGGAAACTTTGGCACTTGCACCAGATCTTTTGAAAGGGAATCAAATGGTTTCATCAATATTTGATATGATAGATAGAAAGTCAGGAATAATGTATAATGTTGGAGAAGAGTTGATGACAGTGGAAGGAACAATTGAGCTAAGAAGGATCAATTTTAGCTATCCTTCAAGACCAAACATTGTTATTTTTAATGATTTCAATCTAATAGTTCCTTCAGGACAAAGTCTTGCTTTGGTAGGGCACAGTGGTTCTGGTAAAAGCTCAATAATCTCACTTATACTTGGATTTTATGATCCAACATCTGGGAAGGTGATGATTGATGGAAAAGATATCAAGAAAATGGATTTGAAATCCGTAAGGAAGCATATCGGTCTAGTACAACAAGAACCAGCACTATTCGCAACATCAATTTATAAAAACATTCTTTATGGCAAAGAAGAAGCATCGGAATCAGAAGTGATTGAAGCAGCTAAACTAGCGAATGCTCATAACTTCATAAGTGCACTTCCTGAAGGCTACTCAACAAAAGCAGGTGAGAGAGGAGTTCAACTATCTGGTGGCCAAAAACAAAGAGTAGCCATTGCAAGAGCTGTTTTGAGAAACCCGAAAATATTACTTCTGGATGAAGCCACAAGTGCACTCGATGTAGAGTCGGAGCGCGTTGTACAACAAGCTTTAGACAAGTTGATGCAAAATAGAACAACAATTATTGTGGCACATAGGCTATCTACAATAAGAAATGCAGATCAAATATCAGTTTTGCAGGATGGAAAGATAATTGAGCAAGGTACTCATTCAAGTCTTATGGAAAATATAGATGGAGCTTATTTCAAATTAGCCAGCTTACAACAACAACAACCACATGTACATAATACATGA 3678 0.3842 MSRRGSRGKKVSLLKLFSFADFYDYVLMAVGSVGACIHGASVPVFFIFFGKIINAIGLAYLYPKEASHQVAKYALDFLYLSIVILFSSWAEVACWMHTGERQVAKMRMAYLKAMLNQDISLFDTDSSTGDVISSITSDIIVVQEALSEKVGNFMHYISRFIAGFIIGFFRVWQISIVTLAIVPLIGIAGGLYAYVTFGLIAKVRKSYLRAGEIAQEVIGNVRTVQAFGGEQRAVISYKVALRNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIIVHKGIANGGVAFTTMLNVVISGLSLGQATPDIAAFIRAKTAAYPIFEMIERDIVSKKTSKACRKLKKIDGHIQFINVCFTYPSRPDVVIFNNLYLEIPSGKVLALVGGSGSGKSTIISLIERFYEPISGQILLDKNDIKELDLKWLRQQIGLVNQEPALFATSIRENILYGKNDATPEELNRALELSNAHSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMIGRTTVIVAHRLSTIRNADIIAVVERGSIVETGNHEELISNSNSVYVSLVQGHPSPDPCLGQSSSIKNLVETSHTSTIGSSFRSDKDSTGACADEAGSVEKPRHVSLIRLYSMIGPYWSYGVFGTLAAFTTGALMPLFALGISHALVSYYMDWDSTQHEVKKIAFLFCGAAIVAITAYTIEHLSFGIMGERLTLRVREIMITAILKNEIGWFDDTRNSSTMLSSRLETDATLLKTIVVDRSTILLQNVGLVVTSFIIAFILNWRITLVVLATYPLIISGHIGEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKIIGLYADELVEPSKRSFKRGQIAGIFYGISQFFIFSSYGIALWYGSLLVEKDLSTFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVSSIFDMIDRKSGIMYNVGEELMTVEGTIELRRINFSYPSRPNIVIFNDFNLIVPSGQSLALVGHSGSGKSSIISLILGFYDPTSGKVMIDGKDIKKMDLKSVRKHIGLVQQEPALFATSIYKNILYGKEEASESEVIEAAKLANAHNFISALPEGYSTKAGERGVQLSGGQKQRVAIARAVLRNPKILLLDEATSALDVESERVVQQALDKLMQNRTTIIVAHRLSTIRNADQISVLQDGKIIEQGTHSSLMENIDGAYFKLASLQQQQPHVHNT 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01996 1225 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 980 1214 IPR003439 GO:0005524
Trre15g01996 1225 ProSitePatterns ABC transporters family signature. 1117 1131 IPR017871 GO:0005524|GO:0016887
Trre15g01996 1225 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 659 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g01996 1225 FunFam ABC transporter B family member 4 968 1221 - -
Trre15g01996 1225 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 29 317 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g01996 1225 CDD ABC_MTABC3_MDL1_MDL2 978 1216 - -
Trre15g01996 1225 CDD ABC_6TM_Pgp_ABCB1_D2_like 648 963 - -
Trre15g01996 1225 CDD ABC_MTABC3_MDL1_MDL2 352 588 - -
Trre15g01996 1225 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 352 588 IPR003439 GO:0005524
Trre15g01996 1225 FunFam ABC transporter B family member 1 342 591 - -
Trre15g01996 1225 Pfam ABC transporter 371 519 IPR003439 GO:0005524
Trre15g01996 1225 Gene3D - 976 1219 IPR027417 -
Trre15g01996 1225 PANTHER ABC TRANSPORTER B FAMILY 8 588 IPR039421 -
Trre15g01996 1225 Pfam ABC transporter 997 1145 IPR003439 GO:0005524
Trre15g01996 1225 SUPERFAMILY ABC transporter transmembrane region 16 322 IPR036640 GO:0005524|GO:0016020
Trre15g01996 1225 Gene3D ABC transporter type 1, transmembrane domain 15 946 IPR036640 GO:0005524|GO:0016020
Trre15g01996 1225 SMART AAA_5 379 565 IPR003593 GO:0016887
Trre15g01996 1225 SMART AAA_5 1005 1191 IPR003593 GO:0016887
Trre15g01996 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 587 IPR027417 -
Trre15g01996 1225 ProSitePatterns ABC transporters family signature. 491 505 IPR017871 GO:0005524|GO:0016887
Trre15g01996 1225 CDD ABC_6TM_Pgp_ABCB1_D1_like 28 325 - -
Trre15g01996 1225 SUPERFAMILY ABC transporter transmembrane region 640 959 IPR036640 GO:0005524|GO:0016020
Trre15g01996 1225 Gene3D ABC transporter type 1, transmembrane domain 947 975 IPR036640 GO:0005524|GO:0016020
Trre15g01996 1225 Pfam ABC transporter transmembrane region 33 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g01996 1225 Pfam ABC transporter transmembrane region 660 931 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g01996 1225 Gene3D - 342 607 IPR027417 -
Trre15g01996 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 971 1216 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01996 Trre-Chr15 16130909 16142562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01996 9 1217 Calmodulin-binding Proteins AT2G36910 50.000 0.0 1203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01996 K05658 - gmx:100819045 1911.73