Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre15g01994 | ATGGATTACAACAGAGACGGCAACGTCGTTCAAATCATCACCTCCGGCGGAGGTGGTGCTGACAGCTGGTCAACCGACCAAGCCGATTGGGCGACGGAAGACGAATATCGATACTGGAACGGTAACGAACCCGGCGAAACCACGCCATCTTCAAACTCAAATTCCGAGAGACAACAACGGTCAGGAAGCGAACCTCCGAGCAAGAAAACAAGAAGCAATTCACAAGATGGCGGATCGAATCGTGCAAAGGCAATCGGAAAAATGTTCTTTAAGACGAAACTGTGTTGCAAGTTTCGTGTGGGAACTTGTCCTTATATAACTAACTGTAATTTTGCTCACAGTGTTGAGGAGCTTCGACGGCCGCCGGCAAATTGGCAGGAGATTGTGGCTGCTCATGAGGAAGAGAGGAATGTGCTTGAGCAGCCGAGGGAAGAGTTTCAGATTCCGACTGTCGGTTCGAGTACTTTTGTAGGAGAGAGTATGAATAATAGGTCTTATAAGGGTAGACATTGTAAGAAATTTTATACTGAAGAAGGTTGTCCTTATGGTGATAGTTGCACTTTTCTTCATGATGAGCAATCAAAGAATCGCGAAAGTGTTGCTATAAGTTTAGGTCCTGGTGGTTATGGTGGTGGTGGTGGTGGAGGTGGTAGTATTGGTATTAGTAGTGGCGGCGGTGGTGGTAGTAGTAGTGGCGTTGTTGTTGTTGCGGCCGGTGCAGCTGCTGGTGGGAATGGACCTAATTTGAAGCCTTCAAATTGGAAAACTAGGATTTGTAATAAGTGGGAGATGACTGGTTATTGTCCCTTTGGTAACAAATGTCATTTTGCTCATGGTGCTACAGAATTACACAGATATGGAGGTGGGCTTATGGAAGGAGAAAACAGAGACACTGCTTCTGCTGTTGGGTCCGACGCAAAACAGGGTGTATCATCAAAAAATCATGCTGATAATGTGGTTGCATCAACTCCTCCTATTGGTCAATCAGATATTTATCATATTGGAGTCCCTTCACAGAGGCCTTCCATTGTGAGTCAAAGGCCAGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATACGGTGATTGGATCGATGACTTCGAATAG | 1125 | 0.4569 | MDYNRDGNVVQIITSGGGGADSWSTDQADWATEDEYRYWNGNEPGETTPSSNSNSERQQRSGSEPPSKKTRSNSQDGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNFAHSVEELRRPPANWQEIVAAHEEERNVLEQPREEFQIPTVGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGSIGISSGGGGGSSSGVVVVAAGAAAGGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGENRDTASAVGSDAKQGVSSKNHADNVVASTPPIGQSDIYHIGVPSQRPSIVSQRPGQRAHQKWKGPDKISRIYGDWIDDFE | 374 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre15g01994 | 374 | SUPERFAMILY | CCCH zinc finger | 87 | 120 | IPR036855 | GO:0046872 | |
| Trre15g01994 | 374 | MobiDBLite | consensus disorder prediction | 43 | 80 | - | - | |
| Trre15g01994 | 374 | MobiDBLite | consensus disorder prediction | 33 | 81 | - | - | |
| Trre15g01994 | 374 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 241 | 285 | IPR045877 | GO:0003729 | |
| Trre15g01994 | 374 | Pfam | CCCH-type zinc finger | 169 | 191 | IPR041367 | - | |
| Trre15g01994 | 374 | SMART | c3hfinal6 | 89 | 115 | IPR000571 | GO:0046872 | |
| Trre15g01994 | 374 | SMART | c3hfinal6 | 165 | 192 | IPR000571 | GO:0046872 | |
| Trre15g01994 | 374 | SMART | c3hfinal6 | 253 | 280 | IPR000571 | GO:0046872 | |
| Trre15g01994 | 374 | MobiDBLite | consensus disorder prediction | 340 | 359 | - | - | |
| Trre15g01994 | 374 | SUPERFAMILY | CCCH zinc finger | 250 | 284 | IPR036855 | GO:0046872 | |
| Trre15g01994 | 374 | FunFam | Zinc finger CCCH domain-containing protein | 85 | 120 | - | - | |
| Trre15g01994 | 374 | ProSiteProfiles | Zinc finger C3H1-type profile. | 165 | 193 | IPR000571 | GO:0046872 | |
| Trre15g01994 | 374 | MobiDBLite | consensus disorder prediction | 301 | 325 | - | - | |
| Trre15g01994 | 374 | MobiDBLite | consensus disorder prediction | 298 | 325 | - | - | |
| Trre15g01994 | 374 | Gene3D | - | 157 | 204 | - | - | |
| Trre15g01994 | 374 | ProSiteProfiles | Zinc finger C3H1-type profile. | 253 | 281 | IPR000571 | GO:0046872 | |
| Trre15g01994 | 374 | FunFam | Zinc finger, CCCH-type | 158 | 197 | - | - | |
| Trre15g01994 | 374 | FunFam | zinc finger CCCH domain-containing protein 15-like | 248 | 286 | - | - | |
| Trre15g01994 | 374 | Gene3D | - | 86 | 120 | - | - | |
| Trre15g01994 | 374 | Gene3D | - | 248 | 285 | - | - | |
| Trre15g01994 | 374 | ProSiteProfiles | Zinc finger C3H1-type profile. | 89 | 116 | IPR000571 | GO:0046872 | |
| Trre15g01994 | 374 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 90 | 114 | IPR000571 | GO:0046872 | |
| Trre15g01994 | 374 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 254 | 279 | IPR000571 | GO:0046872 | |
| Trre15g01994 | 374 | SUPERFAMILY | CCCH zinc finger | 162 | 193 | IPR036855 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre15g01994 | Trre-Chr15 | 16115529 | 16118292 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre15g01994 | 255 | 283 | C3H Transcription Factor Family | AT1G68200 | 62.069 | 3.28e-07 | 49.7 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Trre15g01994 | zf-CCCH | 1.2e-10 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre15g01994 | - | - | gmx:100788208 | 544.273 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre15g01994 | 15 | 16115529 | 16118292 | Trre15g01994 | 15 | 16115529 | 16118292 | ECH |