Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01991 ATGAATAGTAATAATAATCAAGTGGTGCAAAGGAAGAAAAGGAGAAGAAAACCAAGAGTTTGTAAGAACAAAGAAGAAGCTGAGACACAAAGAATCACACACATTACTGTTGAAAGAAACCGTAGAAAGCAAATGAATGAACATCTTGCTGTACTTCGTTCTCTTATGCCTGAATCCTATGTTCAAAGGGGTGACCAAGCTTCAATAGTAGGAGGTGCCATAGAGTTTGTGAAGGAGCTAGAGCATCTCTTACAATCACTTGAAGCTAAAAAGCTACAACTATTACAACAAGAATTAGCACAACAAAGCAATAATAATATTGAAGAAACAAGCAATGTTTCAAAACAAATAATGAAACCACCTTTTGCACAATTTTTTGTGTACCCTCAATATACATGGTCCCAAACACCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTTACATTAATCGAGACTCATGCAAACCTTAGAATTCTCACAAGGACAAGACCAGGACAATTAACTAAATTAGTTGCTGGTTTTCAATCACTTTTCCTCACAATTCTACATCTCAATGTCACTACTATACAGACATTGGTTTTCTACTCTATCAGTGCCAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTAGATGGCATTGCAACAGCAGTTCATCATTTACTTGGAAGAATTGAGGAAGAAACTTCACTAATTTGCTGTTAA 720 0.3639 MNSNNNQVVQRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEAKKLQLLQQELAQQSNNNIEETSNVSKQIMKPPFAQFFVYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRTRPGQLTKLVAGFQSLFLTILHLNVTTIQTLVFYSISAKVEEGFQLGSVDGIATAVHHLLGRIEEETSLICC 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01991 239 PANTHER MAX DIMERIZATION, MAD 6 233 - -
Trre15g01991 239 SMART finulus 35 86 IPR011598 GO:0046983
Trre15g01991 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 29 80 IPR011598 GO:0046983
Trre15g01991 239 Coils Coil 77 112 - -
Trre15g01991 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 28 98 IPR036638 GO:0046983
Trre15g01991 239 MobiDBLite consensus disorder prediction 1 28 - -
Trre15g01991 239 Pfam Helix-loop-helix DNA-binding domain 30 81 IPR011598 GO:0046983
Trre15g01991 239 CDD bHLH_AtFAMA_like 32 91 - -
Trre15g01991 239 Gene3D - 21 106 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01991 Trre-Chr15 16100275 16102416 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01991 21 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 55.319 3.91e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g01991 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01991 - - pvu:PHAVU_003G284500g 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01991 15 16100275 16102416 Trre15g01991 15 16100275 16102416 ECH