Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01990 ATGGCTTTGGAAACACTTTCATCATGTAATGATTTTACAAATTTCATTATCTATGACACAATTTCTGCAACTCCATTTAGTAGTAGTAATACTACAGAGTACTCTGGTTTCTTGGAAAATACAATGAACAACTATGAAGAAAATATTCATCATGAGGCTACAATATTTGATCATAGTAACTTTTCTATGATGAATAACAGAAAAAGGCAATTAATGGAACAAGAAGAAACAATGAAGGAGATGAATAGTAATAATAATCAAGTGGTGCAAAGGAAGAAAAGGAGAAGAAAACCAAGAGTTTGTAAGAACAAAGAAGAAGCTGAGACACAAAGAATCACACACATTACTGTTGAAAGAAACCGTAGAAAGCAAATGAATGAACATCTTGCTGTACTTCGTTCTCTTATGCCTGAATCCTATGTTCAAAGGGGTGACCAAGCTTCAATAGTAGGAGGTGCCATAGAGTTTGTGAAGGAGCTAGAGCATCTCTTACAATCACTTGAAGCTAAAAAGCTACAACTATTACAACAAGAATTAGCACAACAAAGCAATAATAATATTGAAGAAACAAGCAATGTTTCAAAACAAATAATGAAACCACCTTTTGCACAATTTTTTGTGTACCCTCAATATACATGGTCCCAAACACCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTTACATTAATCGAGACTCATGCAAACCTTAGAATTCTCACAAGGACAAGACCAGGACAATTAACTAAATTAGTTGCTGGTTTTCAATCACTTTTCCTCACAATTCTACATCTCAATGTCACTACTATACAGACATTGGTTTTCTACTCTATCAGTGCCAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTAGATGGCATTGCAACAGCAGTTCATCATTTACTTGGAAGAATTGAGGAAGAAACTTCACTAATTTGCTGTTAA 960 0.3479 MALETLSSCNDFTNFIIYDTISATPFSSSNTTEYSGFLENTMNNYEENIHHEATIFDHSNFSMMNNRKRQLMEQEETMKEMNSNNNQVVQRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEAKKLQLLQQELAQQSNNNIEETSNVSKQIMKPPFAQFFVYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRTRPGQLTKLVAGFQSLFLTILHLNVTTIQTLVFYSISAKVEEGFQLGSVDGIATAVHHLLGRIEEETSLICC 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01990 319 SMART finulus 115 166 IPR011598 GO:0046983
Trre15g01990 319 Coils Coil 64 91 - -
Trre15g01990 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 178 IPR036638 GO:0046983
Trre15g01990 319 Gene3D - 101 184 IPR036638 GO:0046983
Trre15g01990 319 Pfam Helix-loop-helix DNA-binding domain 110 161 IPR011598 GO:0046983
Trre15g01990 319 Coils Coil 157 192 - -
Trre15g01990 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 160 IPR011598 GO:0046983
Trre15g01990 319 PANTHER MAX DIMERIZATION, MAD 59 313 - -
Trre15g01990 319 CDD bHLH_AtFAMA_like 112 171 - -
Trre15g01990 319 MobiDBLite consensus disorder prediction 79 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01990 Trre-Chr15 16100275 16102656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01990 101 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 55.319 2.05e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g01990 HLH 5.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01990 - - pvu:PHAVU_003G284500g 397.512