Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01989 ATGGCTCGTACCGATTATCCGACAACATGGATTCCCTATATAAATAGCAAAGATTGTTCTCAAGGATTTTGTAGCATGTATTGTCCACAATGGTGCTACATAGTTTATGCTCCTCCACCACCACCACCTTTTCGATACCCTGATGATGATTCAAAACCATATTTTTCTCCTCTTGTTATTGCAATCATGGGAATTTTAGCCACAGCTTTTCTACTAATAACTTACTACACTCTAATAACCAAATATTGTGGTCATAGAGAATCTTCACACAGAAACAGCACTGACCAAGTTGATGAAATCCAACAAAATCGCCGCGAAAATTGTCAAGTTTCAACCTTTGGCTTAGATGATGCTCAAATAAAATCCATTGCAGTTTTTAAGTACAAAAAAAGAGACACTTTTTTTGCTGGTACTGTCACTGATTGTTCTGTTTGTTTAAGTGAATTTCAAGATGATGAAAGTGTTAGACTTTTACCAATGTGTAATCATGTTTTTCATCTTCCTTGTATTGATACATGGCTTAAATCTAACTCTTCTTGTCCTCTATGTCGTTCCAACATACTCACTTTGAATGCTTCAACATTTCATGCTCCAATTCCAGCTACAGTTATAGAACTTCCTTCAAGAAATGAAATTTCATCAGAAGGTGAACAAATACTTGTGGAAGAAGCAATGATTCATCATCATGGTGGAGTTGATTCGAAGACGCGTTCATTGCGCGCCTATAGTGATTTATGTAATTTACAAGGAAGAGAAAGAATAATTGAAATTAGAGATGAAGTTTGTGAATCCATTGGAAGGTCAGTTTCTATGGATCATTCATTTCAAAATAGTTTTTCAATAAGTGATGTGTTAAATATGAATGAAGATGAAGATTCTGATGAAGGTTGTTCAATGAATCCTTGTTCATCAAAGAGATTACAAGGAGAAAGTAGTAATAAGTCAAGATACAAAAGAAGGGTGTTGCATTGTGTTATGAGTCCAATTGCAATGAAGAGATCATTTTCTAATGGTAGATTTTCACTTAGTAAAATTGATAGAGGAAGAAGGCAGGGAATTTTGCCTGTTTGA 1071 0.3483 MARTDYPTTWIPYINSKDCSQGFCSMYCPQWCYIVYAPPPPPPFRYPDDDSKPYFSPLVIAIMGILATAFLLITYYTLITKYCGHRESSHRNSTDQVDEIQQNRRENCQVSTFGLDDAQIKSIAVFKYKKRDTFFAGTVTDCSVCLSEFQDDESVRLLPMCNHVFHLPCIDTWLKSNSSCPLCRSNILTLNASTFHAPIPATVIELPSRNEISSEGEQILVEEAMIHHHGGVDSKTRSLRAYSDLCNLQGRERIIEIRDEVCESIGRSVSMDHSFQNSFSISDVLNMNEDEDSDEGCSMNPCSSKRLQGESSNKSRYKRRVLHCVMSPIAMKRSFSNGRFSLSKIDRGRRQGILPV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01989 356 SMART ring_2 142 183 IPR001841 -
Trre15g01989 356 PANTHER RING-H2 FINGER PROTEIN ATL16 42 320 IPR044600 GO:0016567|GO:0016740
Trre15g01989 356 Pfam Ring finger domain 141 184 IPR001841 -
Trre15g01989 356 CDD RING-H2_EL5-like 141 184 - -
Trre15g01989 356 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Trre15g01989 356 MobiDBLite consensus disorder prediction 290 314 - -
Trre15g01989 356 SUPERFAMILY RING/U-box 141 190 - -
Trre15g01989 356 FunFam E3 ubiquitin-protein ligase ATL6 102 190 - -
Trre15g01989 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 191 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01989 Trre-Chr15 16093125 16094195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01989 7 349 C3H Transcription Factor Family AT5G17600 38.630 2.35e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01989 - - vun:114176645 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01989 15 16093125 16094195 Trre15g01989 15 16093125 16094195 ECH
Trre9g01876 9 17987107 17988219 Trre15g01989 15 16093125 16094195 PCT