Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01986 ATGGCGGTCGAGAATCAAGACACAGTCCGTGAAATTAAGCCAAAAAACAGAAGAATCATGGGTGCTGGAGGACCTGATGATGAGGAAAATAGGTGGCCACCATGGTTGAAACCTCTGCTTAAAGAACGTTTCTTTGTTCAATGCAAGTTACATGCTGATTCACATAAGAGTGAGTGTAATATGTATTGTTTGGATTGTATGAATGGTGCTCTTTGCTCTCTCTGCCTCAATTATCACAAAGATCATCGTGCTATTCAGATAAGAAGGTCTTCATATCATGATGTGATTAGGGTGAATGAGATTCAGAAGGTATTGGACATATCAGGAGTTCAAACTTATATCATCAACAGTGCAAGAGTTGTGTTCTTGAATGAGAGGCCTCAGCCAAGGCCTGGTAAAGGTGTCACCAACACTTGTGAAGTCTGCGAGCGCAGCCTTCTTGATTCCTTTCGATTCTGTTCTCTTGGTTGCAAGATTGTTGGAACTTCAATGAATTTCCAAAAGAAGAACAAGTCAGCTGCAATGATATCAGACTCAGAGGATTCATACAGCAGCAGTTGCAGCCATGGAAAACTGAAGAACATCAAGGTGCAAAGCTTCACTCCTTCAACACCACCACCAACTTCAGTTAATTACAGAACAGCCAAAAGAAGAAAGGGAATTCCACATCGCGCGCCAATGGGAGGACTAGTCTTGCAATACTAA 705 0.4213 MAVENQDTVREIKPKNRRIMGAGGPDDEENRWPPWLKPLLKERFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLNYHKDHRAIQIRRSSYHDVIRVNEIQKVLDISGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSMNFQKKNKSAAMISDSEDSYSSSCSHGKLKNIKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPMGGLVLQY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01986 234 CDD Bbox2 48 87 - -
Trre15g01986 234 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 26 227 - -
Trre15g01986 234 Pfam PLATZ transcription factor 88 159 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01986 Trre-Chr15 16053263 16055277 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre15g01986 PLATZ 2.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01986 - - mtr:11444793 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01986 15 16053263 16055277 Trre15g01986 15 16053263 16055277 ECH
Trre9g01883 9 18082535 18084397 Trre15g01986 15 16053263 16055277 PCT