Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01979 ATGGCTTCCGATAGCTTCACCGACAAAAACGCTGTGTTCAGAAAACTCAAAACCAAATCCGAAAATAAGACTTGTTTTGATTGCAATGCGAAGAATCCAACTTGGGCATCTGTAACGTATGGGATCTTCCTCTGCATTGATTGCTCTGCTGTTCATCGGAGTCTCGGCGTTCATGTCAGCTTTGTGAGATCTACAAACTTAGACTCATGGACTCCTGAGCAACTTAAAATGATGAGCTTTGGAGGAAACAGTAGGGCACAAGTTTTCTTTAGGCAGCATGGTTGGAACGGCGATGGTAAAGTAGAGGCAAAGTATACTTCCAGAGCTGCAGATTTGTATAAGCAACTGCTTTCAAAGGAAGTTGCCAAAAGCATGTCCGAGGAGGCTGCCTTGTCTTCATCACCTGCTGCTTCTTCGCAGTCTGCCCAAGGGGAAGGTGCTAATGGACTTCCTGATGTTAAGATAATTGAAGTACCAAATGAAAAACCTGTGGAGAAGCCAGAAAAGACCGAGAGCACTTCTTCACCCAGAGCTTCATATACCGCAGTTTCCAATAATTTGAAGAAGCCTCTTGGAGCCAAAAAAACTGTTAAGAGTGGGGGGCTCGGAGCCCGTAAGCTCACTAGAAAGCCAAGTGAGTCGCTCTACGAGCAGAAGCCTCAAGAACCACCTGCTCCAGTTTCATCAACAACAAATATCGACTTGCCTTCTGGGCCATCTCTAACATCTCGGTTTGAGTATACAGATGATGTCCAATCATCTGAATCGAATTCTGGAGGTTCTAATGTAATCAGTCATGTATCTGTACCAAAGTCATCAAGCTTCTTTTCTGACTTTGGAATGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCAAAAGTGCAAATTCAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGATCAGAGCAAGGCCGGAGATGTGGATGCTCAAGCTACTTTATCAAAGTTTTCTGGTTCATCTTCCATTTCTAGTGCCGATCTTTTCGGTGACTCGAGAGATAACTCCTCTGTTGATCTTGCTGCTAGTGATCTTATCAATCGAATATCTTTCCAGGCGCAACAGGATATTTCTTCCCTTAAGAACATAGCAGGAGAGACTGGGAAAAAACTCACCTCCTTGGCATCCTCCTTGATGACAGATCTTCAGGACCGAATTCTCTGA 1227 0.4377 MASDSFTDKNAVFRKLKTKSENKTCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWTPEQLKMMSFGGNSRAQVFFRQHGWNGDGKVEAKYTSRAADLYKQLLSKEVAKSMSEEAALSSSPAASSQSAQGEGANGLPDVKIIEVPNEKPVEKPEKTESTSSPRASYTAVSNNLKKPLGAKKTVKSGGLGARKLTRKPSESLYEQKPQEPPAPVSSTTNIDLPSGPSLTSRFEYTDDVQSSESNSGGSNVISHVSVPKSSSFFSDFGMDSGFPKKSGPSSSKVQIQESDEARKKFSNAKSISSSQFFGDQSKAGDVDAQATLSKFSGSSSISSADLFGDSRDNSSVDLAASDLINRISFQAQQDISSLKNIAGETGKKLTSLASSLMTDLQDRIL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01979 408 MobiDBLite consensus disorder prediction 158 172 - -
Trre15g01979 408 Gene3D Arf GTPase activating protein 1 140 IPR038508 -
Trre15g01979 408 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Trre15g01979 408 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 408 - -
Trre15g01979 408 Pfam Putative GTPase activating protein for Arf 12 111 IPR001164 GO:0005096
Trre15g01979 408 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Trre15g01979 408 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Trre15g01979 408 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Trre15g01979 408 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Trre15g01979 408 MobiDBLite consensus disorder prediction 286 325 - -
Trre15g01979 408 CDD ArfGap_ArfGap2_3_like 8 123 - -
Trre15g01979 408 MobiDBLite consensus disorder prediction 132 146 - -
Trre15g01979 408 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Trre15g01979 408 MobiDBLite consensus disorder prediction 132 264 - -
Trre15g01979 408 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Trre15g01979 408 MobiDBLite consensus disorder prediction 223 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01979 Trre-Chr15 15990442 15997917 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01979 13 90 C2H2 Transcription Factor Family AT4G21160 45.570 4.77e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01979 K12493 K11855 gmx:100785169 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01979 15 15990442 15997917 Trre15g01979 15 15990442 15997917 ECH