Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01972 ATGGCTGAATACCGCTCACCACAGTTAAATATCTGGACAGAGACAGACGACAACTCATCTGTCATGGAAGCTTTTATGAGCACAGCTGACCTTTCTAATTTATGGCTTCCAACACCACACTCCTCCGCATCAACAACCACACCAGGACCCGACTCGGCACAACAACAACCACCACAACAACAACAACAGCCTCTCTTCAATCAAGAGACTCTCCAACACCGTCTTCAAGCTTTAATCGAAGGTGCAAAACAGAATTGGACTTACGCCATCTTCTGGCAGCCGTCTTATGACTATTCTACCGCTACGCCACTCCTCGGTTGGGGCGACGGATACTACAAAGGTGAAGACGATAAAGAAAAAGCCAAAAGAGTTACTAGAATCATTTCTCTTGAAGAACAAGAGCATCGTAAACAAGTTCTACGTCAACTTAATGCTTTAATTTCTGGCTCGTCTGGCTCTGATGATGTTGTTGACGAAGATGTCACCGACACTGAGTGGTTCTTTCTCACGTCGATGACACAATCTTTCGTCAACAACACCGGTTCATTGAGCCAGGCTTACTTTAGTTCAACTCCGGTGTGGATCACCGGAGTTGACAGACTTTCTGGTTCGAACTGTGGACGAGCCCGTGAAGCACATGTCCACGGGATTCAAACCTTTGTATGTATACCAACACCGTCTTCAAACGGCGTCGTTGAGCTTGGTTCTACAGAGGTGATTCCAAATAGCGCTGAGTTAATGGAAAAGGTTCGTGTTCTGTTTAATTTCAATAATCCTGAAGGAGGATCGTGTCCGTTGAATTCTGTTGTAACCGGTCAAAGTGAGAACGATCCTTCCTCTGTTTGGCTCAACGATCTCTCCGGTTCTGCTGCCATGGAAATTCGAGATTCCGTTAATCCCGCTACAACCGCTACCGTTTCTGCTAAAACGTTGCCGTTTGAAACACACGGTTCTTCCAGTACTTTAACGGCAACAACAAGCGCCGTCGCTCAGCGTCAGAATCAGAACCAGAGTTTCTTCCCGAAGGAATTGAATTTTTCGAATTCACTGAAACCAGAATCCGGCGAGATTTTGAATTTCGGTGAAAGTAGAAAGAGTTCTTACAGCGCCGGTAACGGTAATTTCTTTGCTGCCGGTGAGGAAAACAGAAAGAGAAGATCTCCTGTGTCTAGAAGCAGCATTGATGACGGTATGCTTTCGTTCACTTCCGGCGTACTCTTACCGGCTTCAAATATGAAATCCGGTGGTGGCGGTGGAGGTGGAGGTGGAGATTCTGATAATTCGGATCTAGATGTTTCCGTTGTAAAAGAAGCTGACAGCAGTAGAGTACTGGAACAAGAGAAGCGGCCACGAAAGCGAGGACGAAAACCGGCCAACGGAAGAGAAGAACCGTTGAATCACGTTGAAGCAGAAAGACAGAGAAGAGAAAAACTGAATCAAAAATTCTATGCTCTACGTGCAGTGGTTCCAAATGTTTCTAAAATGGACAAAGCTTCACTTCTTGGAGATGCAATTTCTTACATAAATGAATTGAAATCAAAGCTTCAAGGACTTGAATCATCAAAAGATGTGAAGATTATGGGTTGGGATGCAGTGATTAGGATTCAATGTAACAAGAAGAATCATCCTGCGGCGAAGTTGATGGCGGCATTGAAAGAATTAGATCTTGAAGTGAATCATGCTAGTGTGTCTGTAGTGAATGAATTGATGATTCAACAAGCTTCAGTTAACATGGGGAGTCAATTTTACACTAAGGAACAGCTTTCATCTGCTCTTTTTTCCAAAATTGGTGATGCACAATTAGATGAATGA 1812 0.4421 MAEYRSPQLNIWTETDDNSSVMEAFMSTADLSNLWLPTPHSSASTTTPGPDSAQQQPPQQQQQPLFNQETLQHRLQALIEGAKQNWTYAIFWQPSYDYSTATPLLGWGDGYYKGEDDKEKAKRVTRIISLEEQEHRKQVLRQLNALISGSSGSDDVVDEDVTDTEWFFLTSMTQSFVNNTGSLSQAYFSSTPVWITGVDRLSGSNCGRAREAHVHGIQTFVCIPTPSSNGVVELGSTEVIPNSAELMEKVRVLFNFNNPEGGSCPLNSVVTGQSENDPSSVWLNDLSGSAAMEIRDSVNPATTATVSAKTLPFETHGSSSTLTATTSAVAQRQNQNQSFFPKELNFSNSLKPESGEILNFGESRKSSYSAGNGNFFAAGEENRKRRSPVSRSSIDDGMLSFTSGVLLPASNMKSGGGGGGGGGDSDNSDLDVSVVKEADSSRVLEQEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESSKDVKIMGWDAVIRIQCNKKNHPAAKLMAALKELDLEVNHASVSVVNELMIQQASVNMGSQFYTKEQLSSALFSKIGDAQLDE 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01972 603 CDD bHLH_AtAIB_like 459 522 - -
Trre15g01972 603 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 254 IPR025610 -
Trre15g01972 603 MobiDBLite consensus disorder prediction 36 63 - -
Trre15g01972 603 SMART finulus 468 517 IPR011598 GO:0046983
Trre15g01972 603 MobiDBLite consensus disorder prediction 430 472 - -
Trre15g01972 603 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 465 530 IPR036638 GO:0046983
Trre15g01972 603 MobiDBLite consensus disorder prediction 410 472 - -
Trre15g01972 603 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 462 511 IPR011598 GO:0046983
Trre15g01972 603 Gene3D - 455 525 IPR036638 GO:0046983
Trre15g01972 603 PANTHER MYC 44 595 IPR045084 GO:0003700|GO:0006355
Trre15g01972 603 Pfam Helix-loop-helix DNA-binding domain 466 511 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01972 Trre-Chr15 15902705 15904645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01972 1 597 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 50.377 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g01972 bHLH-MYC_N 1.1e-49 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01972 K13422 - gmx:100790854 698.738