Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01968 ATGGGAGACGTGGCAAAGGACCTTACAGCTGGAACTGTTGGAGGGGCTGCACAATTGATAGTTGGACACCCTTTTGACACCATCAAGGTCAAGCTCCAAAGCCAGCCGACACCACTCCCTGGTCAACCTCCCAAGTATTCTGGCGCGTTTGATGCCGTCAGGCAGACAATAGCAGCCGAAGGTCCAAGGGGTTTATACAAAGGTATGGGAGCCCCACTCGCTACGGTTGCAGCCTTCAATGCTCTCCTATTTACAGTTAGGGGACAAATGGAATCATTAGTGAGGTCCCATCCTGGTGCTCCCCTCACTGTGAATCAGCAGTTTGTTTGCGGAGCTGGAGCTGGTGTTGCTGTTTCCTTTCTTGCTTGCCCAACTGAATTAATCAAATGCAGGTTGCAAGCACAAAGTGCACTTGCTGGCACCGGAACTGCAGCTGTGGCCGTTAAATATGGAGGACCGATGGATGTGGCCAGGCATGTTCTCCGCTCAGAGGGGGGTATGAGAGGTCTTTTCAAAGGCTTGGTTCCCACGATGGCACGTGAGATACCTGGAAATGCAATAATGTTTGGCGTATATGAAGCATTAAAGCAACGGTTTGCAGGTGGCACCGATACCTCTGGTCTAAGTAGAGGTTCTCTGATTGTTGCCGGAGGCTTGGCTGGAGGTTCTTTCTGGTTCCTTGTTTACCCAACCGATGTTATTAAAAGTGTGCTTCAAGTAGACGATTATAAGAACCCTAAGTATTCTGGTTCATTTGATGCTTTCAGAAAGATTATGGCTTCTGAGGGATTCAAAGGCCTATATAAAGGTTTTGGTCCTGCAATGGGTAGAAGTATTCCTGCAAATGCAGCATGCTTCTTAGCATATGAGATGACAAGATCAGCTTTAGGATGA 894 0.4821 MGDVAKDLTAGTVGGAAQLIVGHPFDTIKVKLQSQPTPLPGQPPKYSGAFDAVRQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMESLVRSHPGAPLTVNQQFVCGAGAGVAVSFLACPTELIKCRLQAQSALAGTGTAAVAVKYGGPMDVARHVLRSEGGMRGLFKGLVPTMAREIPGNAIMFGVYEALKQRFAGGTDTSGLSRGSLIVAGGLAGGSFWFLVYPTDVIKSVLQVDDYKNPKYSGSFDAFRKIMASEGFKGLYKGFGPAMGRSIPANAACFLAYEMTRSALG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01968 297 FunFam mitochondrial carnitine/acylcarnitine carrier-like protein 2 296 - -
Trre15g01968 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 295 IPR018108 -
Trre15g01968 297 Pfam Mitochondrial carrier protein 214 296 IPR018108 -
Trre15g01968 297 Pfam Mitochondrial carrier protein 102 199 IPR018108 -
Trre15g01968 297 Pfam Mitochondrial carrier protein 4 94 IPR018108 -
Trre15g01968 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 102 198 IPR018108 -
Trre15g01968 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 93 IPR018108 -
Trre15g01968 297 Gene3D Mitochondrial carrier domain 2 296 IPR023395 -
Trre15g01968 297 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 4 296 - -
Trre15g01968 297 SUPERFAMILY Mitochondrial carrier 3 290 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01968 Trre-Chr15 15866614 15870293 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01968 22 296 Antiporters AT1G79900 34.286 2.63e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01968 K15109 - gmx:100791908 541.191